Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03036 ATGAACATTCGTGCGTGGATGCTGTTTGTGCCGCTTTGGCTTACTTTTTCATACACTGTCACTGCCTTCAGCATTTGGTGCCCCCATGGGTGGTTGGCCAAGCTTGGGCTTATTGACTTCTCTGGAGGATACGTTATTCACCTCTCCGCTGGCGTTGCGGGTTTTACTGCTGCTTATTGGGTGGGCCCACGATGTGAGAAGGAGAGGGAAATGTTTCCATCAAATTCAAACAACATGATTATGGTGCTTGCGGGCGCAGGCCTGCTTTGGATGGGCTGGACTGGCTTCAACGGTGGAGGACCGTTTGCGGTCAACACGGTCGCATCTCTCGCCGTTCTTAACACACACGTGTGCGCTTCTGCTAGCATCATTGTTTGGCTCCTACTCGACACTTTCTACTTTGGTAAGCCCACTGTGTTCGGCGCCGTACAGGGCATGATCACTGGCCTCGTTTGCATCACACCTGCCGCAGGGGTTGTGCAAGGGTGGGCAGCGATCTTGATGGGTTTGATCTCGGGAAGCGTTCCATGGTACACAATGATGGTACTCCATAACAAAGTGCCCTTCCTAAAGCAAATCGACGACCCCATGGCGGTGTTCCACACCCACGCCGTCGCCGGCGCTCTCGGCGGCGTTCTGACCGGCCTCTTCGCCGTCCCTAAACTGTGCCGTCTCTTCTACATGGTGCCCGATTGGGATAAATACATTGGGCTGGCCTATGGCCTCCAAAACGGAAAAACGCAAGCGGGGTTAAGACAAATGGGCATCCAAGTTGGGGCCATGGTTTTCGTCATTATCTTCAACTTTGTCACCACCACCTTGATTTGCTTGCTTGTGGGTGTCATTGTACCACTCAGGCTTGACACCAATGCATTGCAAATGGGTGACAAGGCGGTGCATGGAGAAGAGGCTTTCGCCTTGTTTGGTGAGCCTACGAAATTGGAGAACATGAAGCACAATAAAATTTATGATACTCATGACTTTTCGTTCGTTGGCGAGTCAAAGGTATTTAACCAGCTTCAAATGGTTTAA 1032 0.5145 MNIRAWMLFVPLWLTFSYTVTAFSIWCPHGWLAKLGLIDFSGGYVIHLSAGVAGFTAAYWVGPRCEKEREMFPSNSNNMIMVLAGAGLLWMGWTGFNGGGPFAVNTVASLAVLNTHVCASASIIVWLLLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMVLHNKVPFLKQIDDPMAVFHTHAVAGALGGVLTGLFAVPKLCRLFYMVPDWDKYIGLAYGLQNGKTQAGLRQMGIQVGAMVFVIIFNFVTTTLICLLVGVIVPLRLDTNALQMGDKAVHGEEAFALFGEPTKLENMKHNKIYDTHDFSFVGESKVFNQLQMV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03036 343 PANTHER AMMONIUM TRANSPORTER MEP2 1 343 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca03g03036 343 PRINTS Rhesus blood group protein signature 46 61 IPR002229 GO:0005887
Cca03g03036 343 PRINTS Rhesus blood group protein signature 111 133 IPR002229 GO:0005887
Cca03g03036 343 PRINTS Rhesus blood group protein signature 166 184 IPR002229 GO:0005887
Cca03g03036 343 PRINTS Rhesus blood group protein signature 80 98 IPR002229 GO:0005887
Cca03g03036 343 Gene3D Ammonium transporter AmtB like domains 1 309 IPR029020 -
Cca03g03036 343 SUPERFAMILY Ammonium transporter 1 287 - -
Cca03g03036 343 Pfam Ammonium Transporter Family 2 304 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca03g03036 343 ProSitePatterns Ammonium transporters signature. 39 64 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca03g03036 343 PANTHER AMMONIUM TRANSPORTER 1 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03036 Cca-Chr3 51823208 51824512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03036 1 324 Inorganic Solute Cotransporters AT2G38290 53.395 2.37e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03036 K03320 - gmx:100782944 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03036 03 51823208 51824512 Cca03g03036 03 51823208 51824512 ECH