Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03029 ATGAGAGGGATGGGGCTGAGGGGATGGATAAGGAGGCCATTGAAGAGGTTTTGTGATCTTAAGCCACACTCACCCAGCATGGAGAGCGCAGTGCCCTGTTGCGGCGATAAAAGCATAGTACAAGAATTCTTTAAAGTTTTCCTGCTCCAAACAGGTTCTTCCCAGTTGAAATTACCCACATCTTTCACCAAGTTCTTCAATGGAATCACGCCATGCAAGACAATTCTTGTAGACCATGATAGAAATTTCTGGGATATTTACTTGGAGAAAATCGAGGGTCGCTTGGTTTTTAAAAATGGGTGGCAGCAATTTGCCAAGGAGAAAGGTTTAGAAGAAGAGGACTTCTTGGTTTTTCAGTATGATGGCAAGTCTACGTTTAATGTGAAGATATTTTCGAGAACCGGATGCAGGAAAGTAGCTGCACCTTCAAGTTGTGAAAAGATTGTTCCCTCTGTGATTTTGAATAAGGATTCTGATCTGCGTAGTAATAAAATTCAGCGCGGTTGTAAACGGAAACACTCATCGCCAAGTCTCAAAACAAATGAGAAATTAGTGTTAAAGGAATCAAATGAGAAGTCAGTGTTAGAGGAAACAGATGAGAAATCAGTGTTAGAGGGTATACGTCCATCCGAAGAATCTCGGTGCAAACCAACAAGAGTTGCTGAAGAAAATGATAACCACCATGAGAAGAAACCTTGTCTGACCAAGTGTGTTCCATTGCAGAATCCTCATTTTCAGATATATTTTGATGCTGCTTGGAGACTTAAAAAAGTGGAACTTCCAAGAAGAGTGCTGAGGAAAATGAATATCAAGTTGATGCCGAATAGGATCATAAATCTGAGAGATGAGAATGACACATTATGGCCGGTGATCATTACTGCAGGGTTCGGAGATCGTTATTTTTTGGGAAGTGGATGGTCTGTTTTCCAGCGGAGTAACAACATTCAAGAAGGCCAACAATGTGATTTTCAGTTTGTTGTTGACAAAGCAAACGTAGTCCAAGAAATGCTAGTGCGCGTACATTCAAAATGCACTATGAGTTGGGTGGACTGTAAATAA 1059 0.4098 MRGMGLRGWIRRPLKRFCDLKPHSPSMESAVPCCGDKSIVQEFFKVFLLQTGSSQLKLPTSFTKFFNGITPCKTILVDHDRNFWDIYLEKIEGRLVFKNGWQQFAKEKGLEEEDFLVFQYDGKSTFNVKIFSRTGCRKVAAPSSCEKIVPSVILNKDSDLRSNKIQRGCKRKHSSPSLKTNEKLVLKESNEKSVLEETDEKSVLEGIRPSEESRCKPTRVAEENDNHHEKKPCLTKCVPLQNPHFQIYFDAAWRLKKVELPRRVLRKMNIKLMPNRIINLRDENDTLWPVIITAGFGDRYFLGSGWSVFQRSNNIQEGQQCDFQFVVDKANVVQEMLVRVHSKCTMSWVDCK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03029 352 PANTHER B3 DOMAIN-CONTAINING 41 331 - -
Cca03g03029 352 CDD B3_DNA 43 132 IPR003340 GO:0003677
Cca03g03029 352 SUPERFAMILY DNA-binding pseudobarrel domain 240 329 IPR015300 -
Cca03g03029 352 CDD B3_DNA 254 326 IPR003340 GO:0003677
Cca03g03029 352 SMART B3_2 244 344 IPR003340 GO:0003677
Cca03g03029 352 SMART B3_2 44 134 IPR003340 GO:0003677
Cca03g03029 352 Pfam B3 DNA binding domain 43 133 IPR003340 GO:0003677
Cca03g03029 352 SUPERFAMILY DNA-binding pseudobarrel domain 43 136 IPR015300 -
Cca03g03029 352 ProSiteProfiles B3 DNA-binding domain profile. 41 134 IPR003340 GO:0003677
Cca03g03029 352 ProSiteProfiles B3 DNA-binding domain profile. 243 341 IPR003340 GO:0003677
Cca03g03029 352 Gene3D - 239 344 IPR015300 -
Cca03g03029 352 Gene3D - 37 136 IPR015300 -
Cca03g03029 352 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 41 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03029 Cca-Chr3 51757450 51767978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03029 42 342 B3 DNA Binding Superfamily AT5G66980 29.206 9.22e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca03g03029 B3 1.7e-16 CL0405