Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03028 ATGGGGAAGGCGAGCAAATGGATTAGAAACTTCCTTCTAGGGAAGAAAGAAGAGAAACTCAAGAAGATCGATGGGTTCTGCCCTGAGGATAAGAGTGTCAACAAGGGGAGTCAGATTGTGAGTTCCAAAGTGAAGCGCAGATGGAGCTTCGGGAAGCTAACAGGTGGAAGAATAACAAGCAAGGTAGCAGGGCATAAATTTTCAAGATCTTTTGACTCAGGTGACTCTGCCAAACTGCAAATACAAGCCTTATTGGAAGCCAAGACTCCAAGGCGTCTTCCAACACCGCTGGCCAAGGCTTCTAGAGATAAAAACAAAGCTGCTATAAAGATTCAAGCTGGCTTTCGCTCATATTTGGCAAAGAGAGCATTGCATGCTTTAAAGGGATTAGTCAAGTTGCAGGCACTGGTGAGGGGTCACCTTGTGAGGAAACAAACCACTGCTACACTGCGTGGCATGCATGCGTTAATGGCCATACAAGTTAGAGCTCGGATTCACAGAATTCAGATGGCAGAGGAAGCTAACCTCCTCGGGAAACAGCCTCCGCAACATACAGAAGTTACACACTTCAGTGATTTTATAACAGAAGAAAATAAAGATTCATGGGATATGAGTGTGGAAGAAATGTTGGAGGTTTTGAAAAGCAGAAGTGGCCCTCTAGATGGTTCGCATGTTAAGAGCAGAGAGCGTGATTCCATGACATTCTATTCCAAGCATCTGCCGGTTGTTTCTAAACGACAAAACCAATACAAGAATACTCTAATTATGTCTGAAATTAACCCAACGACAATGGCCTTATCAACTTCTCAGCGCCATTCAGTGACTCACCGCCAATCATTGTCACCAAATTACATGAACAAGACAGAATCTTCAAGGGCAAAAGCAAGGTCGCAGAGTGAACCGAAACAACGACCCAAACAGGGAACGAGGCACAAAGGCAAGTCTGTGGAATACCCATTGAATGGCCCAAGACAAAATCTTTTTTCAAACTCGTTACGCTACGATCATGGAAGCCTGGACCATTGGGTTATCAATCTTCATGGGTCAATGAAGGACAGCAGACGCGATTCCTTTGGTAGCAGCTCGGTCACTACTGATTCCTATTATTGA 1110 0.4459 MGKASKWIRNFLLGKKEEKLKKIDGFCPEDKSVNKGSQIVSSKVKRRWSFGKLTGGRITSKVAGHKFSRSFDSGDSAKLQIQALLEAKTPRRLPTPLAKASRDKNKAAIKIQAGFRSYLAKRALHALKGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRARIHRIQMAEEANLLGKQPPQHTEVTHFSDFITEENKDSWDMSVEEMLEVLKSRSGPLDGSHVKSRERDSMTFYSKHLPVVSKRQNQYKNTLIMSEINPTTMALSTSQRHSVTHRQSLSPNYMNKTESSRAKARSQSEPKQRPKQGTRHKGKSVEYPLNGPRQNLFSNSLRYDHGSLDHWVINLHGSMKDSRRDSFGSSSVTTDSYY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03028 369 PANTHER IQ-DOMAIN 5-RELATED 1 356 - -
Cca03g03028 369 MobiDBLite consensus disorder prediction 265 325 - -
Cca03g03028 369 Gene3D - 102 155 - -
Cca03g03028 369 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Cca03g03028 369 MobiDBLite consensus disorder prediction 265 292 - -
Cca03g03028 369 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Cca03g03028 369 SMART iq_5 126 147 IPR000048 GO:0005515
Cca03g03028 369 SMART iq_5 103 125 IPR000048 GO:0005515
Cca03g03028 369 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 356 - -
Cca03g03028 369 MobiDBLite consensus disorder prediction 293 313 - -
Cca03g03028 369 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Cca03g03028 369 Pfam IQ calmodulin-binding motif 131 145 IPR000048 GO:0005515
Cca03g03028 369 Pfam Protein of unknown function (DUF4005) 267 312 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03028 Cca-Chr3 51753595 51755551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03028 1 322 IQD Protein Family AT4G14750 35.135 2.48e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03028 - - gmx:100527816 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03028 03 51753595 51755551 Cca03g03028 03 51753595 51755551 ECH