Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03027 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTCCTCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATAATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTCATGGCACTTGATTACTTGCATGTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCCGATATTCCTTACGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACGTCTCTTAAGCCTGCATTCAAAGCATTTGATATACAATCCCTGATTAACAAGATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCGGCAGAGCTACTTGGGCACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTTAAAATCAATAGCCCAAGGCGAAATACATTGCCAGGTCATTGGCCAGAATCCAATTACATAAAGAAAACTAGATTTTTGAAGTCAGAAGCTGATCCTGTTTCCCTCTCTGGGTATAAGTGGCATTCTTTTAGCAATGATCGGACTTTAAACCCTAGTGTATCAAGAGCAGAACAAGATTCTCTATGCTCTACGCTAGAGATAGACTGTACTACTGTTAATTTAAATCAAAGATTTGCTGAACTTTGTGTTGGAGACAACCATGACGTGAAGTCACTCCATAAGCCAGCTGTTTCCAAAAATTCCAGTAATGCCAAGACTCCTAAACTAACTGCATCAAAAGCTTCTGCCACCTCCAAGAAATTAACGGTGCCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAATACGAAACAACCAGTCCATACAACTCGCCGAGTATCATTGCCATTGCCAAAAAGTTGTGCCATTCAGCAGCCTCCTCGTAGGTCCAGTATTGGTTTACTTGACCATGTAAACTCGCCCAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGATCCATTGTTTCCTGTCAATAGATCTTCACCAAACTCGGTGCAGGGGTCCTCAGGCTCTCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACAGCCTATGTTAGGCCAGGTTGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATATACAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCATCACCGACAATTTGATACGTCGTCATTTCAACAAAGGGCTGAAGCCTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCTTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAACCGGGAACAATCCATCTAA 1848 0.4194 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHQHLQPYVLKVHLKINSPRRNTLPGHWPESNYIKKTRFLKSEADPVSLSGYKWHSFSNDRTLNPSVSRAEQDSLCSTLEIDCTTVNLNQRFAELCVGDNHDVKSLHKPAVSKNSSNAKTPKLTASKASATSKKLTVPSKNHKTLPVSHNTKQPVHTTRRVSLPLPKSCAIQQPPRRSSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDPLFPVNRSSPNSVQGSSGSPPCGNDSTLIDKCTIKVCDTAYVRPGCTDAWQGIKRSIYKSGSSDQNATAGASSHNSSDLHHRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQSI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03027 615 MobiDBLite consensus disorder prediction 361 411 - -
Cca03g03027 615 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03027 615 CDD STKc_Nek 3 258 - -
Cca03g03027 615 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 600 - -
Cca03g03027 615 MobiDBLite consensus disorder prediction 362 411 - -
Cca03g03027 615 MobiDBLite consensus disorder prediction 525 545 - -
Cca03g03027 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cca03g03027 615 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Cca03g03027 615 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Cca03g03027 615 PANTHER SERINE/THREONINE-KINASE NEK4 1 600 - -
Cca03g03027 615 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Cca03g03027 615 MobiDBLite consensus disorder prediction 525 541 - -
Cca03g03027 615 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03027 615 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03027 615 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03027 Cca-Chr3 51746341 51753345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03027 10 295 MAP Kinase Kinase Kinase AT1G53570 29.870 1.22e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca03g03027 Pkinase 3.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03027 K08857 - gmx:100796019 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03027 03 51746341 51753345 Cca03g03027 03 51746341 51753345 ECH
Cca03g03027 03 51746341 51753345 Cca02g01557 02 34246532 34253861 PCT