Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03026 ATGTTCGATGGAGAAACAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTAACTTGTCTTTCCCTCTCCATTCCTCTTCAACCCCAAATACCTTCCTACCCTTTGATCTCTATAACCCTCACTTTCCTCTCCAAACCAATCTCTTGCACCACccttctccttctccttctccttctccttctccCTCCCACAAACACAAGCAACCAAATGTCAACGTTCAAACACAATTGCCAGACCTAACCGATTCCTGGACCAACGATGAAGTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGGTTCCCAGACCTCACATGGGACCATGTCTCAAGGAAGCTAGCAGAGCTTGGCTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTAGATACTTCGACAACATTAACCTCGGCAAGAACAACTACCGGTTTCTCAGCGAGCTTGAGGAGCTTTGTCAAAACTCTGATCCTGGTGGTTGTGGTGGGGACAGCCACCACCACGCATTGAAGGAAAATTCGAGAGACATTGAGACCAAACAATGTGATGATGAGGTGGTGGTGGAAAAGTCAAAGGAGCGCAAGAGGAAGCGGCGTGATAGGTTCGAAATGTTCAAGGGTTTCTGCGAGAGTGTTGTGAACAAGATGATGGCTCAGCAAGAAGAGATACACAACAAGCTCCTCCACGACATGATGAAGAGGGACCAAGAGAAGTTCGCCAGAGAAGAAGCGTGGAAGAAGAAAGAGATGGAAAGAATGAACAAGGAGCTTGAGATCATGGCGCAAGAGCAAGCCATTGCTGGTGATAGACATGCCACCATCATTGAATTCTTGAAGAAGTGCGCAACTACTACAAATCTTCCAAACTGTTCTTCTTCTTCACCTTCCCAATTGCACCCGCAAAACCCTAATAATAACCCTTCCAATGAGGGCAACAATCTTGATCCAAATCATGATGATCAAGCTACATGGGAAGCAGAAAACCCTAGCACAAATGACACATTAGTACTACAAGTTCCTTCTTCCTCCAATTCTTCCCCAGCCCCCCACAACAACCCTAGTTCTTCTTCCCTGAATAGCCACAATAGTATTATTCCATTAGAGTCAAATTCAGTTTCCACATATAAGAGCACTTTGGCCACAAGTGAGAGTTGGAAAGAGGATGTTGGGAGGAGATGGCCAAGAGATGAAGTGTTAGCACTGATAAACCTGAGGTGCACAAGTGTAAGTAACAGCAACAATGAAGAGAAGGAGGGGAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTTGGAGCTTGGATACAAGAGGAGTGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACTTGTCCCTATTTTCATCAACTCAGTTGTTTGTATGGCATTGGTCAGGGAAAAATTGTGCCACAGTCCGAAAGGGAAGGGTTTGATTCTAATCCAACCGCGAATTCCTGTGAAGTGCCACCGGAAGCTGATGAGTCTCCTCAAGTGGGGTCTGCTGGTTTGGTGCAGTATGCATGTTGA 1617 0.4465 MFDGETDQFHQFIAPRTTLPLNLSFPLHSSSTPNTFLPFDLYNPHFPLQTNLLHHPSPSPSPSPSPSHKHKQPNVNVQTQLPDLTDSWTNDEVLALFRIRSTMENWFPDLTWDHVSRKLAELGFKKSAEKCKEKFEDESRYFDNINLGKNNYRFLSELEELCQNSDPGGCGGDSHHHALKENSRDIETKQCDDEVVVEKSKERKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNKLLHDMMKRDQEKFAREEAWKKKEMERMNKELEIMAQEQAIAGDRHATIIEFLKKCATTTNLPNCSSSSPSQLHPQNPNNNPSNEGNNLDPNHDDQATWEAENPSTNDTLVLQVPSSSNSSPAPHNNPSSSSLNSHNSIIPLESNSVSTYKSTLATSESWKEDVGRRWPRDEVLALINLRCTSVSNSNNEEKEGNKGPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGIGQGKIVPQSEREGFDSNPTANSCEVPPEADESPQVGSAGLVQYAC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03026 538 Coils Coil 256 276 - -
Cca03g03026 538 Pfam Myb/SANT-like DNA-binding domain 400 487 IPR044822 -
Cca03g03026 538 Pfam Myb/SANT-like DNA-binding domain 86 148 IPR044822 -
Cca03g03026 538 PANTHER - 13 513 - -
Cca03g03026 538 ProSiteProfiles Myb-like domain profile. 401 461 IPR001005 -
Cca03g03026 538 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 513 - -
Cca03g03026 538 MobiDBLite consensus disorder prediction 296 372 - -
Cca03g03026 538 MobiDBLite consensus disorder prediction 50 73 - -
Cca03g03026 538 MobiDBLite consensus disorder prediction 502 531 - -
Cca03g03026 538 CDD GT1 400 468 - -
Cca03g03026 538 Gene3D - 402 466 - -
Cca03g03026 538 Gene3D - 88 144 - -
Cca03g03026 538 SMART sant 84 141 IPR001005 -
Cca03g03026 538 SMART sant 398 463 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03026 Cca-Chr3 51733723 51736053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03026 211 491 Trihelix Transcription Factor Family AT5G28300 48.621 5.48e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca03g03026 Myb_DNA-bind_4 1.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03026 - - gmx:100795995 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03026 03 51733723 51736053 Cca03g03026 03 51733723 51736053 ECH
Cca03g03026 03 51733723 51736053 Cca02g01556 02 34209547 34211942 PCT