Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03020 ATGAACGAGCTTCAAACTGATTcctctgcctctgcctctgcctctgcctctgactctgAGTTTGTTGAACTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTATACAGAGCATTTGATGAGTATCAAGGGATCGAAGTTGCGTGGAACCAGGTCAAATTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGACTTTACTGTGAAATTCATCTCCTCAAGACGTTGAAGCACAGAAACATAATGAAATTTTACACGTCTTGGGTCGATACTGCAAACAGAAATATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCCTTAGACAGTATAGACAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCTCTATCTTCATAGCCATGACCCACCTGTGATCCATAGAGATCTCAAATGTGATAATATTTTTATCAATGGAAACCAAGGGGAAGTTAAGATCGGAGATCTTGGGTTGGCAGCAATTCTTCGCAAGTCCCATGCTGCTCATTGTGTAGGAACGCCTGAGTTCATGGCACCAGAAGTTTATGAAGAGTCATATAACGAATTAGTTGACATATATTCATTTGGGATGTGTGTATTAGAAATGATCACATTTGAATACCCTTATAGCGAATGTAGCCATCCAGCACAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGATGCCTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTCGTTGAGAAATGCCTGGCAACAGTGTCTCTAAGGCTCTCTGCTAGGGAGCTTCTAGATGATCCTTTTCTTCAAATTGATGATTACGAGTATGATTTGGGACCAGTGGACAGTGGATCTTATGATGACTTTGGATCTCTTATCCATCAGCCACTCTTTGATCACCGTAGTTATAGTAATTTAAGTACTGAATTTGCAAATGGCTTTGAATATGAAGGAGACTGGTATTCTCATCCGGCTGAGATTGAACCTAGTGGAATCGAACTTTTCGAGTGCCATGATGATGAATCCTCTGAAGATGTTGACATAAGCATCAAAGGCAAGAGGAAAGATGATGGTGCTATCTTTTTGAAACTAAGAATTGCAGACAAAGAAGGCCATATTCGAAATATTCACTTCCCATTTGACATAGAGATGGATACAGCATTAAGCGTAGCCACTGAAATGGTTGCTGAACTCGATATTACTGATCAAGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCGTTGATACCTGAATGGAAGCCAGGACCGGGAATTGAAGAAACTAATCATTTTGTAAATAAACAAAATTTTCATAATTGTGTGTCTAATCATACTTCTGGTGTTGTGGATTTTGTTTCACATAATCAAAGTGGAAAGAACTCGCAGCTTCCTCTATGCTCTAGCTTTGGATGTACTTCAATGCATGGGCGGTTTGAGGAGATTACCTTACAATTTGAGTATGACAAGCATGTGGGAAGGGATGCACCACCTAACGAATCGCAGTATCAGGAGTTATGGAATCATCAAGAAAGTTGTGAGGTGAGTCCAGTAGAGTCTGATCAAAGTCAATCTGATGAACAATATGAGCAATTAGATAAATCAGTTTCAGCAGAAGACAAAGTTTGTCAAGAAACCAAGTTTGCACATGATACCGGAAACTCCGCACGTAGTTTATCAAGAAATCATTTCTCTAGTATGCGGTTTTTATGTTTTGGCCGATCTTTTAATAAATATAAGAAAGAGGTTCAACAAGAATTGAGATGGAAAAAAGCAAAACACCAAATGGAGTCAAGGAAACTTAGGGATAAACTGTTTGGCATAGCAGCTAAATCTTCACATTCTAGTAGCAGAGAGCACAAAACAGAACAAGGCATTTATTATGCCACCTTCATTGACAGAAACAGTAAAAGGAGTGGACCATGGGATTCACTTGAAACCCTTGGATAA 2016 0.3874 MNELQTDSSASASASASDSEFVELDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMITFEYPYSECSHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVDSGSYDDFGSLIHQPLFDHRSYSNLSTEFANGFEYEGDWYSHPAEIEPSGIELFECHDDESSEDVDISIKGKRKDDGAIFLKLRIADKEGHIRNIHFPFDIEMDTALSVATEMVAELDITDQDVTRIADMIDGEIASLIPEWKPGPGIEETNHFVNKQNFHNCVSNHTSGVVDFVSHNQSGKNSQLPLCSSFGCTSMHGRFEEITLQFEYDKHVGRDAPPNESQYQELWNHQESCEVSPVESDQSQSDEQYEQLDKSVSAEDKVCQETKFAHDTGNSARSLSRNHFSSMRFLCFGRSFNKYKKEVQQELRWKKAKHQMESRKLRDKLFGIAAKSSHSSSREHKTEQGIYYATFIDRNSKRSGPWDSLETLG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03020 671 Gene3D - 377 444 - -
Cca03g03020 671 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 655 - -
Cca03g03020 671 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 15 655 - -
Cca03g03020 671 ProSiteProfiles Protein kinase domain profile. 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03020 671 SUPERFAMILY Protein kinase-like (PK-like) 34 289 IPR011009 -
Cca03g03020 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Cca03g03020 671 CDD STKc_WNK 29 288 - -
Cca03g03020 671 Gene3D Transferase(Phosphotransferase) domain 1 114 293 - -
Cca03g03020 671 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03020 671 Gene3D Phosphorylase Kinase; domain 1 15 112 - -
Cca03g03020 671 SMART serkin_6 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03020 671 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 381 434 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03020 Cca-Chr3 51660602 51663615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03020 19 504 MAP Kinase Kinase Kinase AT3G22420 58.271 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca03g03020 Pkinase 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03020 K08867 - gmx:100790554 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03020 03 51660602 51663615 Cca03g03020 03 51660602 51663615 ECH
Cca03g03020 03 51660602 51663615 Cca02g01549 02 34112298 34116499 PCT