Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03017 ATGGCTTCTCAGCAACACGACGCCGTTTTCCGcgaagaggacatggacgacgacgacgagtcccaggaggacgaagaatacgaagaggacgacgacgaagaaaacgacCCCTCTCtctccgcctccgccgctctcgccgttaccgtcgctgtccccggttccgccgtctccaacggcgcccccgccccgatgtcggcgccctccgccaccaccgtcgtggtcgccgACTCCTCCGATCCGAAGCGGCGGCGCGTGGACCAAATCGAGGAGAAGAAGCCGCTGGACGACTCGCGGCGGCTCTTCCAGCGGCTGTGGACCGACGAAGACGAGATCGAGCTCCTGCAAGGCTTCCTCGATTACACCTCGCAGCGAGGATCCTCTCAACACAACGACACCGCTCTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGGAGGCTCAAGAAGAAGTACCGCAACGTCCTCAACAAAATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCCCGCAAGATCTGGAGCAACGTGGCGCCTATCGGCGACAATTCCCTCGACGACGACGAAATCaaccctagccccaacactaaccctaaccctaaccccaaccttaaTTTTAGCCCTGTAATTCTCAAGAATGAAATGGTTTTCAGGAATTCCGCGGAGAAGAAAACACCGAAACGCCCTCGGCCTCGATCGGCCCCGAAAATCGAGCCAATCGATGGATCCGCGTCGAACAGAGATCATAATTGTATAAGCAATGCTACTCCTACCGTTACACCTACTGCTACAGCCAACGCCACCACTACGGGTGCtaataataataacaataatTGTAACAGTGGCGGTTATAGCAATAACATACCGAGTTTGATCGAAGAGACGGTGAGGAGTTGTTTGTCGCCGGTGTTGAAGGAGTTGATGGCTGGCGCCATGGGAGGGACGTTTGGGGCGAGAGCGTTTCCGTTCAACATGAGTCCTTTGCCTTTGAGTTTTGGCGGTGCGGAACTGGTGGATGAGAAATGGAAGAAGCAACAGATTTTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTTGTGCAGGATCAGATCAAAGCTGCTATGGAGGAGTTGCGGTCTAGTGGAACTGGATCACACACATTGTAG 1206 0.4204 MASQQHDAVFREEDMDDDDESQEDEEYEEDDDEENDPSLSASAALAVTVAVPGSAVSNGAPAPMSAPSATTVVVADSSDPKRRRVDQIEEKKPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSQHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNVAPIGDNSLDDDEINPSPNTNPNPNPNLNFSPVILKNEMVFRNSAEKKTPKRPRPRSAPKIEPIDGSASNRDHNCISNATPTVTPTATANATTTGANNNNNNCNSGGYSNNIPSLIEETVRSCLSPVLKELMAGAMGGTFGARAFPFNMSPLPLSFGGAELVDEKWKKQQILELEVYSKRLELVQDQIKAAMEELRSSGTGSHTL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03017 401 MobiDBLite consensus disorder prediction 204 227 - -
Cca03g03017 401 MobiDBLite consensus disorder prediction 266 300 - -
Cca03g03017 401 Pfam Protein of unknown function, DUF573 101 195 IPR007592 GO:0006355
Cca03g03017 401 MobiDBLite consensus disorder prediction 1 90 - -
Cca03g03017 401 MobiDBLite consensus disorder prediction 61 75 - -
Cca03g03017 401 PANTHER BNAANNG10740D PROTEIN 1 395 - -
Cca03g03017 401 MobiDBLite consensus disorder prediction 240 255 - -
Cca03g03017 401 Coils Coil 149 169 - -
Cca03g03017 401 Coils Coil 370 390 - -
Cca03g03017 401 MobiDBLite consensus disorder prediction 240 300 - -
Cca03g03017 401 PANTHER BNAANNG10740D PROTEIN-RELATED 1 395 IPR007592 GO:0006355
Cca03g03017 401 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03017 Cca-Chr3 51642897 51645281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03017 26 398 GeBP Transcription Factor Family AT5G28040 45.320 1.93e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Cca03g03017 DUF573 1.6e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03017 - - gmx:100779712 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03017 03 51642897 51645281 Cca02g01546 02 34089190 34090596 PCT