Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03013 ATGGCCTCGTCACCTTCTTCTCTAACATTTACAGTGCGGAGGTGTCAAATCGAGTTGGTGGCTCCTGCTATACCCACTCCTCACGAACTTAAACTACTATCCGACATAGATGATCAAAATGGCTTCTGGATGCAGATTCCGATGATACAAATTTACCGTAACGAACCATCAATGGTAGAGAAAGATCCGGTTGAAGTGATTCGGAAGGCTCTTGCGCAAACACTTGTGTTCTATTACCCACTTGCGGGTAGGCTTAGGGAGGGTTCTGGCCGCAAATTGATGGTGGATTGTACAGGTGAGGGCGTCTTGTTCATTGAAGCTGACGCAGACATAACACTTGATGAGTTTGGCGACGCTCTCCAACTTCCATTCTCGTACTTACAAGAACTACTATATGAGGTTCCAGGCTCTCAAGACGTTACTAACACTCCCCTTCtactcatacagGTTACACGACTTAAGTGTGGTGATTTCATCTTGGGCTTGCGGTTCAACCACATCATTCAGGACGCAGGTGGTCTATTACAGTTCATGAGCGCGTGGGCCGAAATGGCTCGAGGTGCAACCAAACCTTCCATTTCACCTCTGTGGCGTAGAGAACTCCTAATGGCAAGAGACCCACCTCGCATCACATGCAACCATCGCGAATACGACCAAGTCCCACACACCAACAAACGAACCTTCTCTTCCTACGAGGACGACATGGTTCATCGATCATTCTTCTTTGGACCAGCCGAAATAGCTACCCTCCGTCGCTTGCTACCACCCCACCTCTGTCGATGCTCCACGTTTGATGTCATCACAGCATGCTTCTGGCGCTGTCGCACAAAAGCTTTGCAAATAGAGGCACACGAGGATGTTCGCATGATGTGCACGATCAACGCACGTGCTAGGTTCAATCCTCCGTTACCCGTTGGTTATTACGGCAATGTTGTTGCGTACCCCGCAGCAGTCACCACTGCAGGGAAGCTTTGTGGAAATCCATTCGGGTATGCTGTGGAGTTAATAAATAAATTGAAAGGTGAGGTGACAGAAGAGTACATGCATTCCGTGGCAGATTTAATGGTCATTAAGGGACGATGCTCATTTACACGTGTAAGGTCTTGTATTATTTCGGATTTGACACGTGCTAGGTTTAGAGAAGTGGATTTTGGATGGGGTCATGCTGTGTATGGTGGAGTGGCCCAAGGTGGAGCTGGGTCCTTTCTTGCAGCAACCTATCATGTCCCGTATAAGAATGCAAAAGGAGAAGAAGGTATCGTATTGCCAATTTGGTTGCCCTCTCAAGCTATGGATAGGTTTGTGAAAGAGTTGAATGACATGCTTCGGAACCAAAACCAACCAAAAACTAGTAGCCCTTGTTTTATCACCGCTACCTTATAG 1383 0.4714 MASSPSSLTFTVRRCQIELVAPAIPTPHELKLLSDIDDQNGFWMQIPMIQIYRNEPSMVEKDPVEVIRKALAQTLVFYYPLAGRLREGSGRKLMVDCTGEGVLFIEADADITLDEFGDALQLPFSYLQELLYEVPGSQDVTNTPLLLIQVTRLKCGDFILGLRFNHIIQDAGGLLQFMSAWAEMARGATKPSISPLWRRELLMARDPPRITCNHREYDQVPHTNKRTFSSYEDDMVHRSFFFGPAEIATLRRLLPPHLCRCSTFDVITACFWRCRTKALQIEAHEDVRMMCTINARARFNPPLPVGYYGNVVAYPAAVTTAGKLCGNPFGYAVELINKLKGEVTEEYMHSVADLMVIKGRCSFTRVRSCIISDLTRARFREVDFGWGHAVYGGVAQGGAGSFLAATYHVPYKNAKGEEGIVLPIWLPSQAMDRFVKELNDMLRNQNQPKTSSPCFITATL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03013 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 444 - -
Cca03g03013 460 Gene3D - 217 438 IPR023213 -
Cca03g03013 460 Gene3D - 7 216 IPR023213 -
Cca03g03013 460 PANTHER ALCOHOL ACYLTRANSFERASE 10 444 - -
Cca03g03013 460 Pfam Transferase family 15 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03013 Cca-Chr3 51595314 51597724 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03013 44 438 Monolignol Biosynthesis Gene Families AT5G48930 28.922 9.59e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03013 K19861 - gmx:100792864 676.781