Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03010 ATGGCCTCATCATCTCCCTCTCTATCTTTCACGGTGCGTAAGTGCCAACCCGAGCTAGTGACTCCTGCTATACCCACTCCTCACGAAACTAAACTACTATCTGACATAGATGATCAAGAATTCCTGCGTTTCACTTATTCAATCATACAAATTTATCGTAACGAATCATCGATGGCAAATAAAGACTCCGTGAGAGTGATTCGGCAGGCACTAGCGCAAACACTTGTGTTCTATTATCCATTTGCAGGTAGACTTAGGGAAGGGCGTGGTCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGTCACATTTGTTGAGGCTGACGCAGACATAACACTTGATCAATTTGGTGACGCTCTCCAACCTCCATTCGTATACTCTAGTGAATTCCTATGTGATGTTCCAGACCCGCAAGAAGAACTTACAACCTGCCCCCTTCTACTCATACAGGTCACACGACTCAAGTGTGGTGGTTTCATCGTGGCCACTGGGTGGCACCACACCATGGCTGACGGAGCTGGTTTGTCACAATTCATGAACGCGTGGGCTGAAATGGCTCGAGGCGCAAGGGCTCCTTCCATTGCACCTGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGATCCACCACGCATTACACGTAACCATCGCGAATACGAGCATATCGAAGACACCAAGGTAGGAACTAATTCACACGATAACCTTGTTCGTCGATCATTCTTCTTTGGACCCACTGAGATCGCTGCCATTCGTCGCTTGGTTCCCTACCACCTTCGGCATTGCACCGCGTTTGATGTTATCACAGCGTGCTTGTGGCGCTGTCGCACAAAAGCACTGCAAATAGAGCCAGACGAGGATGTTCGTATGATGTGCATCGTGAACGCGCGTTCTAGGTTTAAGCCTCCGCTACCTGTTGGTTACTACGGAAACGCTTTTGCATACCCCGCAGCGATCACCACCGCAGGGAAGCTTTGCGGAAATCCATTTGGGTATGCTGTGGAGTTAATAAATAAAGTGAAAAGTGAGGTGACAGAGGAGTACATGCATTCTGTGGCGGATCTAATGGTGATTAAGGGACGATGCATGCTGACAACTGTTAGGTCTTGTCTCGTGACGGATTTGACACGTGCGCGGTTTAGGGACGTGGATTTTGGATGGGGCAAGGCAGTGTCTGGTGCACCAGCAATAGATAAGGCTGAGCCCTTTCCTGCAGCAACACATATTGTGTCATATAAGAATCCAAAAGGAGAAGATGGGTTAGTGTTACCAGTTTTGTTGCCTGCAGAAGCTATGAACAGGTTTCTCAAAGAGATGGATGACTTGCTTGGGAACACAAACCAACCCACAGGAGCTGGTCCTGGTTTTATCAAGTCTACCATCTAG 1380 0.4855 MASSSPSLSFTVRKCQPELVTPAIPTPHETKLLSDIDDQEFLRFTYSIIQIYRNESSMANKDSVRVIRQALAQTLVFYYPFAGRLREGRGRKLMVDCTGEGVTFVEADADITLDQFGDALQPPFVYSSEFLCDVPDPQEELTTCPLLLIQVTRLKCGGFIVATGWHHTMADGAGLSQFMNAWAEMARGARAPSIAPVWRRELLMARDPPRITRNHREYEHIEDTKVGTNSHDNLVRRSFFFGPTEIAAIRRLVPYHLRHCTAFDVITACLWRCRTKALQIEPDEDVRMMCIVNARSRFKPPLPVGYYGNAFAYPAAITTAGKLCGNPFGYAVELINKVKSEVTEEYMHSVADLMVIKGRCMLTTVRSCLVTDLTRARFRDVDFGWGKAVSGAPAIDKAEPFPAATHIVSYKNPKGEDGLVLPVLLPAEAMNRFLKEMDDLLGNTNQPTGAGPGFIKSTI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03010 459 Pfam Transferase family 12 439 - -
Cca03g03010 459 Gene3D - 7 216 IPR023213 -
Cca03g03010 459 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 443 - -
Cca03g03010 459 Gene3D - 217 436 IPR023213 -
Cca03g03010 459 PANTHER ALCOHOL ACYLTRANSFERASE 10 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03010 Cca-Chr3 51555563 51557990 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03010 19 435 Monolignol Biosynthesis Gene Families AT5G48930 28.670 4.19e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03010 K19861 - gmx:100792864 673.7