Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03007 ATGGCCAGCAGCCCAGCTCCAAACACTCATTCAAACATGGCCTCACCATCTCCCTCTCTAATGTTTACAGTGCGAAGGTGCCAACCTGAGTTGGTAGCTCCTGCTATACCCACTCCTAATGAACTTAAACTACTATCCGATATAGATGATCAAGATTCCCTGCGTTTTCATGTTCCAGTTTTACTAATTTATCAAAACGAACCATCAATGGCTGATAAAGATCCGGTTGAAGTGATTCGGAAGGCTTTGGCACAAACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTTAGGGAGGGCCCTGGCCGCAAATTGATGGTAGATTGTACCGGAGAGGGTGTGCTTTTCACTGAGGCTGATGCAGACGTAACATTTGATCAGTTTCGAGATAATCTTCAACCTCCAATCCCATGCCTCGAAGAACTGCTATATGATGTTCCAGGCACCCAAGAAATTACCAACACTCCCCTTCTACTCGTACAGGTCACAAGACTCAAGTGTGGTGGATTCATCTTGGCCATCCGCTTTAACCACACCATGAGCGACGCATCTGGTTTGTCACAATTCTTGAACGCGTGGGCCGAAATTGCTCGAGGAGCAACCAAACCTTCCATTTCACCTCTGTGGCGTAGAGAACTCCTAATGGCAAGAGATCCACCTCGCATCACATGCAACCATCGCGAATACGAGCAAGTCCCAGACACCAACAAAGGAACCTTCTCTTCCAATGAGGACGACATGGTTCATCGATCATTCTTCTTCGGACCCGTCGAGATAGCTGCCCTTCGTCGCTTGATCCCCGATCACCTTCAAAAATGCTCCACATTCGATATCATCACAGCATGCTTGTGGCGCTGTCGCACAAAAGCATTGCAAATAGAGGCACATGAGGATGTTCGCATGATGGTCATCGTCAACGCACGTGCAAGATTCAACCCTCCGATGGTACCTGTTGGTTATTACGGCAACGCTTTTGCATTTCCGGCAGCAGTCACCACCGCCGGGAAGCTTTGCCAAAACCCGTTTGGGTATGCTGTGGAGTTGATAAATAAAGTGAAAGGTGAGGTGACAGAAGAGTACATCCAATCCGCGGCAGATCTAATGGTGATTAAGGGACGATGCTTATTTACAACAGTAAGTTCTTTTATTGTGTCGGATACAACACGCGGCAAGTTTAGAAACGTGGATTTTGGATGGGGTGATGCTGTGTTTGGTGGACCGGCCAAAGGTGGGATAGGGGCCTCTTCAGCAGTAACCTATTTCATCCCTATTAAGAATCCAAAAGGAGAAGAAGGTATAATATTTGTGATTGGGTTGGATGCTGAAGCTATGGAAAGGTTTGTGAAAGAGTTGAATGACATGCTTTGGAACCAAAACCAACCTCAAAGGAATGGTGCTAAATTTATCAAGTCTACCTTGTAA 1422 0.4655 MASSPAPNTHSNMASPSPSLMFTVRRCQPELVAPAIPTPNELKLLSDIDDQDSLRFHVPVLLIYQNEPSMADKDPVEVIRKALAQTLVFYYPFAGRLREGPGRKLMVDCTGEGVLFTEADADVTFDQFRDNLQPPIPCLEELLYDVPGTQEITNTPLLLVQVTRLKCGGFILAIRFNHTMSDASGLSQFLNAWAEIARGATKPSISPLWRRELLMARDPPRITCNHREYEQVPDTNKGTFSSNEDDMVHRSFFFGPVEIAALRRLIPDHLQKCSTFDIITACLWRCRTKALQIEAHEDVRMMVIVNARARFNPPMVPVGYYGNAFAFPAAVTTAGKLCQNPFGYAVELINKVKGEVTEEYIQSAADLMVIKGRCLFTTVSSFIVSDTTRGKFRNVDFGWGDAVFGGPAKGGIGASSAVTYFIPIKNPKGEEGIIFVIGLDAEAMERFVKELNDMLWNQNQPQRNGAKFIKSTL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03007 473 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 457 - -
Cca03g03007 473 Gene3D - 20 228 IPR023213 -
Cca03g03007 473 Gene3D - 229 451 IPR023213 -
Cca03g03007 473 PANTHER ALCOHOL ACYLTRANSFERASE 22 457 - -
Cca03g03007 473 Pfam Transferase family 27 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03007 Cca-Chr3 51540381 51542306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03007 31 451 Monolignol Biosynthesis Gene Families AT5G48930 29.252 3.79e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03007 K19861 - gmx:100792864 736.873