Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03000 ATGGGGTGTGTGATTAGCAGGGAAGCGTCGAAGGGGATAGTCTCTGAGGGGAAGGAGGAGAAGGGTTTGAGTGGTGAGTCTAAGAGGAAGGTTGATGGAGTGTCAGGGAGCAAggatgaggtggtggaggttcagaatggtggtggtggcggcggtgaaggggtgCAGCAGCAGCGGCCTCGGGGCGAGAGGAGGAGATCGAAGGCGAATCCGCGGCTGAGCAATCCGCCCAAGCATTTGAGAGGGGAGCAGGTTGCAGCTGGCTGGCCACCCTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCCGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGGACTTATAGTAATGTGTATAAAGCTAAAGATACGATGACGGGTAAAATTGTTGCTCTAAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTTGATTACATGGACCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACGGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAATCGTCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCTTCTATTTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTAGTAACACTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCCGGATGTATTTTAGGAGAGTTATTGGCAGGGAAGCCAATCATGCCTGGTCGTACAGAGGTGGAGCAACTGCACAAGATATACAAACTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCACGAGAGCCATACAAGAGGCGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATACACTTCTTGCAATTGACCCTGTAGAACGAAAAACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCATCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAATGAGGAGACTAAGAGCTGCAAGCAAACCTCAGGCTGATGGTCCAAAGAAGCATCGCACGCGTGATCGTGCTGTAAAAGCTTTTCCTGCTCCGGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGGCAACTTGGTTTTCCTTTGGGATCTTCACATCACATTGATCCAGATACTGTTCCTAATGATGTCTCTTTTACGTCAACCTCGTATATCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATAGGTAATGCTGCTGACAATGGAGTGGCTAAGCGGAAGAAACACACCACAGGTGATGCATTGGATTTATCAAAACCACATAAAGATGCCCTCAAGGACAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1725 0.4388 MGCVISREASKGIVSEGKEEKGLSGESKRKVDGVSGSKDEVVEVQNGGGGGGEGVQQQRPRGERRRSKANPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRETFKDFPPSALPLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAASKPQADGPKKHRTRDRAVKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPNDVSFTSTSYIYSKEPFQAWSGPIGNAADNGVAKRKKHTTGDALDLSKPHKDALKDKVKGKKIIA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03000 574 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Cca03g03000 574 PANTHER OS01G0367700 PROTEIN 63 551 - -
Cca03g03000 574 MobiDBLite consensus disorder prediction 12 37 - -
Cca03g03000 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Cca03g03000 574 CDD STKc_CDK9_like 112 396 - -
Cca03g03000 574 PANTHER CELL DIVISION PROTEIN KINASE 63 551 - -
Cca03g03000 574 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03000 574 MobiDBLite consensus disorder prediction 539 561 - -
Cca03g03000 574 MobiDBLite consensus disorder prediction 540 561 - -
Cca03g03000 574 MobiDBLite consensus disorder prediction 414 447 - -
Cca03g03000 574 MobiDBLite consensus disorder prediction 1 84 - -
Cca03g03000 574 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Cca03g03000 574 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03000 574 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g03000 574 Gene3D Transferase(Phosphotransferase) domain 1 195 434 - -
Cca03g03000 574 SUPERFAMILY Protein kinase-like (PK-like) 107 403 IPR011009 -
Cca03g03000 574 MobiDBLite consensus disorder prediction 404 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03000 Cca-Chr3 51454363 51459744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03000 104 436 Core Cell Cycle Gene Families AT5G10270 53.009 7.22e-124 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca03g03000 Pkinase 7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03000 K08819 - gmx:100786837 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03000 03 51454363 51459744 Cca02g01530 02 33865229 33870629 ECH
Cca03g03000 03 51454363 51459744 Cca03g03000 03 51454363 51459744 ECH
Cca03g03000 03 51454363 51459744 Cca02g01530 02 33865229 33870629 PCT