Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02997 ATGGGACCGCCGAAGAAAAGCGCGGCTAGGGTTTCAGAGGACCCCGACGAACTGGTGCGGGTTCCATTGCAGGCCGTTCTCTTGGCCGATAGTTTCACCACCAAGTTCAGACCTATCACGCTCGAACGCCCCAAAGTGTTGCTGCCGCTCGTGAATGTTCCGATGATAGATTACACATTGACTTGGCTCGAATCTGCTGGCGTCGAAGAAGTCTTTGTTTTCTGCTGTTCTCATTCCAAACAGGTCATTAGCTATCTTGAAAAATCCGAGTGGTTTTCTCAACCTAATTTCACGGTTACTACTATAGAGTCGCAGAATTCAGTGAGCGCCGGAGATGCGCTCCGCGTGATTTACGAGCGCAATGTGGTACATGGAGACTTTGTGCTTATCAATGGAGATACTGTAAGCAATATGTCACTTACCCAGGCACTTATAGAGCATAAAGAAAGGAAGAAGAAAGATAGTAATGCCGTAATGACTATGATCATTAAACATTCGAAAACTAATCCGGCTATCCATCAGTCTCGACTTGGTACTGATGAACTTTTCATGGCCATTGATCCTAATACCAAGCAACTTCTGTATTATGAGGATAAGGCAGACCATTCTAAAGGAACTCTACATCTTGACAAGTCATTGCTTGTTGATAATCCTTCGCTCTCCCTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCGCCGGAAGTCCTTAGCCTATTTACGGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCGGACTATGCTGCAAGGATTGATAATTTCCGAAGTTATGACACTGTCAGCAAGGATATAATTCATCGATGGACATATCCACTGGTTCCAGATGCAATGAATTTTGGTAACACAGCTATGAAACTTGAACGACAAGGAATGTACCGTGCTTCAGAAATATTACAATCGCAATCTGCTGTTGTTGGCCCTTTTACTGTCATAGGTTCTGGCACCAAAATTGGGAATCACACTAAAATTTCAAATTCTGTTATTGGAGAGGGATGTAAAATTGGGTCAAATGTTGTCATAGAGGGATGTTATATATGGGATAACATCACCATAGAAGATGGCTGTAAACTCCAGCATGCAATTGTATGTAATGGGGTGATTATAAAGTCTGGGGCTGTTCTGGAACCTGGTGTTGTTTTGTCTTTCAAGGTTGTAGTTGGGCCGGAATTTGTTGTTCCTCCCTATTCGAAAGTATCTTTATTACAGCAGCCAATTGAGGAAGATAGTGATGAAGAGCTTGAATACGCAGATAGTACTAGTGCCATCGGAAGCCAAGTGGATAAGTCAGATGTAGAGATTGCTTCCGAAGTGGATAAGACACATTTTAGTCCTGTTTCAGAGCTAGGTATGGGTGGGGCTGGTCATGTTTGGTCAACATGTGAAGGAGGCCATGAAGAAGAGTGGAGACATTCAGTGGCACCTATTCCAAAAGATAAAATTCTGGAGGCAATTAAAACTATGGAAGATGATATGGAATTAACTCATGATGGCAGTTTTCTTCCACTTTCTGGAGAGCTGAAACCTAATTCTAatgattcagatgatgatgatcatgaagatTCTAAAGAAGACTCTTATTACTTTGAGAAAGAGGTTGAAGCAACCTTTCTCAGGGCTGTGCACGAAAACATACAAGAAAGTCATTTAAACTTAGAAATCAACTCGTTGAAGTTGTCGTACAATAAGCTAACTGCTGATTGTGCCGGAGCTGTATTTTATGCCATGATGAAGTTTGCTTTAGACACCCCCCATAGTTCAGCTGATAGCTTGCTTAAAAATGTTCAGCTTGTATTTACAAAATGGAAACAGGTTCTTACAACCTATCTGATTGACATAGATGATCAGATTGAAATAATACTAAAATTTGAAGAAATGTGTTCGGAATCTGCAAAGGAGTTTGCTCCATTGTTCACAAAGATTTTGCACCACTTGTATAATGAAGATGTTGTAAATGAAGATGCTATTTTGAGTTGGGAAGATGAGAAAAAAGATGCTGATGAGGCAGATAAAGTTTTTGTTAAGCAGGCCCAAAAATTAATTCAATGGCTAAAAGAGGCACCTGAAGAAGACGACGATGAATAA 2175 0.4041 MGPPKKSAARVSEDPDELVRVPLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMIDYTLTWLESAGVEEVFVFCCSHSKQVISYLEKSEWFSQPNFTVTTIESQNSVSAGDALRVIYERNVVHGDFVLINGDTVSNMSLTQALIEHKERKKKDSNAVMTMIIKHSKTNPAIHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTLHLDKSLLVDNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDAMNFGNTAMKLERQGMYRASEILQSQSAVVGPFTVIGSGTKIGNHTKISNSVIGEGCKIGSNVVIEGCYIWDNITIEDGCKLQHAIVCNGVIIKSGAVLEPGVVLSFKVVVGPEFVVPPYSKVSLLQQPIEEDSDEELEYADSTSAIGSQVDKSDVEIASEVDKTHFSPVSELGMGGAGHVWSTCEGGHEEEWRHSVAPIPKDKILEAIKTMEDDMELTHDGSFLPLSGELKPNSNDSDDDDHEDSKEDSYYFEKEVEATFLRAVHENIQESHLNLEINSLKLSYNKLTADCAGAVFYAMMKFALDTPHSSADSLLKNVQLVFTKWKQVLTTYLIDIDDQIEIILKFEEMCSESAKEFAPLFTKILHHLYNEDVVNEDAILSWEDEKKDADEADKVFVKQAQKLIQWLKEAPEEDDDE 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02997 724 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Cca03g02997 724 MobiDBLite consensus disorder prediction 525 555 - -
Cca03g02997 724 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 14 303 IPR029044 -
Cca03g02997 724 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 724 - -
Cca03g02997 724 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 370 IPR029044 -
Cca03g02997 724 Pfam eIF4-gamma/eIF5/eIF2-epsilon 645 724 IPR003307 GO:0005515
Cca03g02997 724 SMART 542_3 633 720 IPR003307 GO:0005515
Cca03g02997 724 Gene3D - 546 724 - -
Cca03g02997 724 Gene3D Hexapeptide repeat proteins 319 458 - -
Cca03g02997 724 ProSiteProfiles W2 domain profile. 553 724 IPR003307 GO:0005515
Cca03g02997 724 SUPERFAMILY ARM repeat 559 717 IPR016024 -
Cca03g02997 724 Pfam Nucleotidyl transferase 25 165 IPR005835 GO:0009058|GO:0016779
Cca03g02997 724 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Cca03g02997 724 CDD W2_eIF2B_epsilon 559 722 IPR044123 GO:0005085|GO:0031369
Cca03g02997 724 CDD LbH_eIF2B_epsilon 341 419 - -
Cca03g02997 724 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02997 1 717 Eukaryotic Initiation Factors Gene Family AT2G34970 64.917 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02997 K03240 - gmx:100784894 1302.73