Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02996 ATGGGTGGCGAATTAAGTTACGTGCTTTCAAAATTGCCAATGCTATCAACTTCAGATTATGCCTCCGTTGTGTCCATGAACATTTTTGTGGCTCTGCTTTGTGCTTGTATTGTCATTGGACATCTTCTTGAGGAGAATCGGTGGGTGAATGAGTCTATCACTGCCCTTTTGATAGGTCTTTGCACTGGCGTGGTGATATTGTTGATGAGTCGCGGTAAAAGCTCACATCTTCTAGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGGTTTCAAGTGAAGAAGAAACAGTTTTTTGTTAACTTCATGACCATCACTCTGTTTGGTGCTGTTGGTACATTAATAAGTTGTAGCGTCATAACATTCGGTGTCATGCAAATCTTTAAGAGAATGGATATTGGTAAAGCACTGGAAATAGGGGATTATCTAGCAATTGGTGCAATATTTGCTGCGACAGATTCTGTGTGCACGTTGCAGGTGCTAAACCAGGACGAGACACCTTTACTATACAGTCTTGTATTTGGCGAGGGTGTTGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATCCAAAGTTTTGACCTCAAGCAAATTGACCACAGAATTGGTTTACATTTTATCGGCAACTTCTTGTATCTGTTTGTCGCAAGCACCTTGCTTGGGGTTTTGGCTGGTTTACTTAGCGCTTACATTATTAAGAAGCTCTATATTGGCAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAATTATGGTACCTAAGTGGCATTCTAACTGTATTCTTCTGCGGGATTGTTATGTCTCATTATACTTGGCATAATGTTACCGAGAGCTCAAGAATCACTACTAAGCATGCTTTTGCAACTCTCTCATTTGTTCTTGAAACCTTTATCTTCCTTTACGTTGGTATGGATGCCTTGGACATTGAAAAGTGGAGGTTTGTTAGTGATAGGCCTAAAACATCTGTTGCTGTGAGTTCAGTATTATTGGGTCTAGTACTTGCAGGGAGAGCAGCATTTGTTTTTCCCCTATCCTTCTTATCCAACCTCACTAAAAAGTCGCCAAGCGAAAGAATAAGTTTCAGGGAGCAGGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTACAATCAGTTCACGATGTCGGGTCACACTGAATTGCGAACCAATGCCATCATGATCACCAGCACCATCTCTGTTGTGCTTGTCAGCACCATGGTGTTTGGTTTGATGACTAAGCCACTCATAAGGTTTTTGTTGCCTGTCACTCACCCTCCTACAAGCATAAACATCATCGGAAATATAGATTCATGTCACAATTCCCCCAAATCAATCACTGTACCCTTTCTTGGAGGCTCCCAAGATTCTGAAAACGACCTTGATGTCAATGAAATTCATCGTCCAAACAGTATTCGTGCCTTACTAACAACTCCAACGCATACTGTTCATCGCTTATGGCGTAAGTTTGATAATACATTTATGCGTCCAGTTTTTGGTGGTAGAGGGTTTGTTCCAGTTGCTCCATCCTCACCAACTGACCAAAGCGGTGTTCAACAGTGGCAATAA 1647 0.4183 MGGELSYVLSKLPMLSTSDYASVVSMNIFVALLCACIVIGHLLEENRWVNESITALLIGLCTGVVILLMSRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITLFGAVGTLISCSVITFGVMQIFKRMDIGKALEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLKQIDHRIGLHFIGNFLYLFVASTLLGVLAGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVLETFIFLYVGMDALDIEKWRFVSDRPKTSVAVSSVLLGLVLAGRAAFVFPLSFLSNLTKKSPSERISFREQVIIWWAGLMRGAVSMALAYNQFTMSGHTELRTNAIMITSTISVVLVSTMVFGLMTKPLIRFLLPVTHPPTSINIIGNIDSCHNSPKSITVPFLGGSQDSENDLDVNEIHRPNSIRALLTTPTHTVHRLWRKFDNTFMRPVFGGRGFVPVAPSSPTDQSGVQQWQ 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02996 548 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 547 - -
Cca03g02996 548 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca03g02996 548 Gene3D - 144 198 - -
Cca03g02996 548 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca03g02996 548 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca03g02996 548 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca03g02996 548 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cca03g02996 548 PANTHER SODIUM/HYDROGEN EXCHANGER 7 547 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02996 Cca-Chr3 51413796 51418862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02996 10 542 Antiporters AT3G05030 75.514 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02996 - - gmx:100787925 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02996 03 51413796 51418862 Cca02g01529 02 33847019 33851880 PCT