Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02994 atgctggtggtccggtgtaggccgagGCATGCTTTTGCAACTCTCTCATTTGTTCTTGAAACCTTTATCTTCCTTTACGTTGGTATGGATGCCTTGGACATTGAAAAGTGGAGGTTTGTTAGTGATAGGCCTAAAACATCTGTTGCTGTGAGTTCAGTATTATTGGGTCTAGTACTTGCAGGGAGAGCAGCATTTGTTTTTCCCCTATCCTTCTTATCCAACCTCACTAAAAAGTCGCCAAGCGAAAGAATAAGTTTCAGGGAGCAGGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTACAATCAGGATGTATCAGGTGATGCAGCCTGCAGTTTATTACTGTACCTCCAATACGATCTTAAAGTTAGATGTTTTTTAGAAACTGACACTCTTGTAAAATGCAGTTCACGATGTCGGGTCACACTGAACTGCGAACCAATGCCATCATGA 474 0.3987 MLVVRCRPRHAFATLSFVLETFIFLYVGMDALDIEKWRFVSDRPKTSVAVSSVLLGLVLAGRAAFVFPLSFLSNLTKKSPSERISFREQVIIWWAGLMRGAVSMALAYNQDVSGDAACSLLLYLQYDLKVRCFLETDTLVKCSSRCRVTLNCEPMPS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02994 157 PANTHER SODIUM/HYDROGEN EXCHANGER 5 111 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cca03g02994 157 Pfam Sodium/hydrogen exchanger family 11 107 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca03g02994 157 PANTHER SODIUM/HYDROGEN EXCHANGER 2 5 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02994 Cca-Chr3 51372976 51374166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02994 5 110 Antiporters AT3G05030 80.189 7.51e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02994 - - ccaj:109792100 188.734