Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02980 ATGCTTGTGGTTACATGTGTCATGCAGGGACACAGTAAAGTGAGTTCTGCAAACAGATCAAAGATGGTCCCAATTGACCATGGTTTTGATGACAGGCACAAAAAAGGAGACATTTCATTTTCTGCACAAGACTCAGGACAAGTCGATTTGGAGAAAGAGGAAAAGGTCATAACTCTAAGAGAACTTCTAGAGGACTGCATTATAGACACTGACAACTCTGATCAACCACCTGAAGTGGCTGTTAATTGTCCAAGCTTAAGAACACGATTTCACCGGAGCAAGCTTTCTAAAATATGGAAAATAAGACCAATTAAGAACCTACCATCTTTTCCACCAAGTTGTGTGCCAAACATAACAAAATCTAAAAGCAAAACCATTGGAGGAAACCCTGTTCTATACAATTCCAGAGCTTTGGTGGATTTCAGCCTCTCTGACCTGAGAATTGCCACCAACAATTTTAGCAATGAAAATTTTATTGGAAGAGGTGGCTATGCTGATGTTTTCAAGGGTAGCCTCCAAGATGGGCAACTAATAGCAGTTAAGCAACTGAACAAAGGCACTCCAGAAGACAGGACCTCAAGTTTTCTATCTGAGTTAGGTATTCTTGCTCATGTTGATCATCCTAACACAGCCAATCTTATTGGATGTGGTGTAGAAGGAGGAATGCACCTGGTCTTCCAACTATCTCCACTGGGAAATTTAGGGTCTCTTCTTCATGGTCCAAATAAAAATATATTAAATTGGAGTAAAAGGTATAAAATTGCTTTAGGAATAGCGGATGGCCTCCTCTATCTTCATGAGATTTGCCAAAGGCGAATCATTCATAGAGACCTTAAAGCAGAGAATATTCTGCTTACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCAAAATGGTTACCAGAACAGTGTACTCACCATAATGTATTGAAATTTGAAGGCACAATGGGgtattttgctcctgaatatttgatgcatggcgtagtagacgagaaaactgatatttactcctttggggtcctgcttttggagatTATATCTGGGCGTCGTGCATTGGATCACTTGCAACAAAGTATTGTGTTATGGGTAAGTCATTGTCCTAAATGCTGGTAG 1119 0.37 MLVVTCVMQGHSKVSSANRSKMVPIDHGFDDRHKKGDISFSAQDSGQVDLEKEEKVITLRELLEDCIIDTDNSDQPPEVAVNCPSLRTRFHRSKLSKIWKIRPIKNLPSFPPSCVPNITKSKSKTIGGNPVLYNSRALVDFSLSDLRIATNNFSNENFIGRGGYADVFKGSLQDGQLIAVKQLNKGTPEDRTSSFLSELGILAHVDHPNTANLIGCGVEGGMHLVFQLSPLGNLGSLLHGPNKNILNWSKRYKIALGIADGLLYLHEICQRRIIHRDLKAENILLTENFEPQICDFGLAKWLPEQCTHHNVLKFEGTMGYFAPEYLMHGVVDEKTDIYSFGVLLLEIISGRRALDHLQQSIVLWVSHCPKCW 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02980 372 SMART serkin_6 153 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02980 372 Gene3D Transferase(Phosphotransferase) domain 1 230 371 - -
Cca03g02980 372 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524
Cca03g02980 372 PANTHER OS08G0249100 PROTEIN 63 365 - -
Cca03g02980 372 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 63 365 - -
Cca03g02980 372 Gene3D Phosphorylase Kinase; domain 1 116 227 - -
Cca03g02980 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Cca03g02980 372 SUPERFAMILY Protein kinase-like (PK-like) 130 359 IPR011009 -
Cca03g02980 372 Pfam Protein tyrosine and serine/threonine kinase 156 360 IPR001245 GO:0004672|GO:0006468
Cca03g02980 372 ProSiteProfiles Protein kinase domain profile. 153 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02980 Cca-Chr3 51250573 51254441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02980 138 351 Receptor kinase-like Gene Family AT1G53420 46.544 2.80e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca03g02980 PK_Tyr_Ser-Thr 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02980 - - gmx:113001177 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02980 03 51250573 51254441 Cca02g01516 02 33751042 33754372 ECH
Cca02g01175 02 29298369 29302130 Cca03g02980 03 51250573 51254441 ECH
Cca03g02071 03 40975849 40979703 Cca03g02980 03 51250573 51254441 ECH
Cca08g02184 08 55093125 55096703 Cca03g02980 03 51250573 51254441 ECH
Cca03g02980 03 51250573 51254441 Cca03g02980 03 51250573 51254441 ECH
Cca03g02980 03 51250573 51254441 Cca02g01516 02 33751042 33754372 PCT