Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02965 ATGTGTTTGGCTATGGCACTAGAAGCAGTAGTGTATTCCCAACCACAGGACCCGTTTGGCTTTGGAATCAAAGACCCCTACAACTTGTTAGAAGGTGTTGGAGGCAACTGGGGCTATGGAGATTTCAACCTTGAACAACAAGACCAAGCTTGTGTCTCTTTTCTCGAGAACCAAACAGAGAATTACCCTTATGGAGATCAATGGAACATGTTACCCCACATCACTGCTTCAAATCCTCCTTCTTCTGAGACcagcaacacacacaacaacaacaacaacaacagcaacaacTTGGATAGCTCAACTTCCACCCCTGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGAAAGAACAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCCCTTATGCCTGAATCTTACGTCCAAAGGGGTGATCAGGCATCTATTATTGGGGGTGCTATCAACTTTGTGAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTGAGAAAGAGAAAGAGGGGAAATCTGAAGTGCCCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCAAGTGGTGGCTGTGAGAATTCTGCAGCGATGAGTGAGCAAAAGGGTGAGGCTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAGTCTCAAAATAAGATCCAAGAAACGCCCAAAGCAGCTCTTGAAAATAGTCTCTAGCTTGCATTGCATGCGCCTCACAATCTTGCACCTAAATGTCACCACCACTGGGGAAATTGTCCTCTATTCTCTCAGTGTTAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATTGCTGCAGCTGTATACCAAATGCTGGATAGGATTCAACAAGAATCAATGTTGAATTAA 960 0.4354 MCLAMALEAVVYSQPQDPFGFGIKDPYNLLEGVGGNWGYGDFNLEQQDQACVSFLENQTENYPYGDQWNMLPHITASNPPSSETSNTHNNNNNNSNNLDSSTSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAEKEKEGKSEVPFSEFFSFPQYSTSASGGCENSAAMSEQKGEAQSGIADIEVTMVESHASLKIRSKKRPKQLLKIVSSLHCMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLDRIQQESMLN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02965 319 MobiDBLite consensus disorder prediction 70 123 - -
Cca03g02965 319 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
Cca03g02965 319 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 5 319 - -
Cca03g02965 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 188 IPR036638 GO:0046983
Cca03g02965 319 Coils Coil 172 192 - -
Cca03g02965 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Cca03g02965 319 PANTHER MAX DIMERIZATION, MAD 5 319 - -
Cca03g02965 319 Gene3D - 115 191 IPR036638 GO:0046983
Cca03g02965 319 SMART finulus 130 181 IPR011598 GO:0046983
Cca03g02965 319 MobiDBLite consensus disorder prediction 70 104 - -
Cca03g02965 319 CDD bHLH_AtFAMA_like 127 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02965 Cca-Chr3 51061544 51063385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02965 5 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.758 3.15e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02965 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02965 - - gmx:100777413 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02965 03 51061544 51063385 Cca02g01507 02 33659778 33661735 PCT