Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02964 ATGAACAAACCCCTATTCCTCCTCCTAATCGTCCTAATCGGCGCggcccaggcccaggcccaggcccagccccagccccagcccaACAACGACGCTCCCGTCCAAAACCTAAACCAGTTCAACCCATCCCTCGCCGTAGTCATCATCATACTCGTCGCCGCCCTTTTCCTCGTCGCCTTCTTCTCCATCTACATCCGCCACTGCGCCGATTCCTCCCCCAACTCCCTGGGCCCGgccgccgccgccgccgccgcacgcgccAGGAGAGCGGCGCGTGGGCTGGACCCCGAACTCATCGAAACTTTCCCCATCCTGGAATACTCGGAAGTGAAGATCCACAAAATCGGAAAAGAAGCGCTGGAGTGCGCCGTCTGCCTCTGCGAGTTCGAGGACACCGAAACGCTGCGTTTGATTCCAAAGTGCGACCACGTCTTCCACCCTGAATGCATCGACGAGTGGCTCAAATCGCACACCACGTGTCCCGTCTGCAGAGCCGACCTCGCTCCGGCCGAACCTCACGacgccaacgccaacgccaacgccaacgcTATCGATATTCCAGATCCCGATGCGCCAGACTTGGAAGCGCAAAACGACGCCGTTGAGACCGCTCCAGAGCGGCAGAACGCCGAGGCTGAAAGAGTACTGCCTGAACCTGAAGTCGTTTCCCTGGACAAGACGCTGAACCGGAACCGGACGCGAGGCTCGCGGTCGAACCGGACGCGGCGGTTTCCGCGGTCGCACTCGACCGGTCACTCGCTGGTCCAACCCGGGGAGAACACGGAGGGGTTCACTCTGTGA 801 0.5231 MNKPLFLLLIVLIGAAQAQAQAQPQPQPNNDAPVQNLNQFNPSLAVVIIILVAALFLVAFFSIYIRHCADSSPNSLGPAAAAAAARARRAARGLDPELIETFPILEYSEVKIHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLKSHTTCPVCRADLAPAEPHDANANANANAIDIPDPDAPDLEAQNDAVETAPERQNAEAERVLPEPEVVSLDKTLNRNRTRGSRSNRTRRFPRSHSTGHSLVQPGENTEGFTL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02964 266 Pfam Ring finger domain 121 164 IPR001841 -
Cca03g02964 266 SUPERFAMILY RING/U-box 121 170 - -
Cca03g02964 266 CDD RING-H2_EL5_like 121 164 - -
Cca03g02964 266 SMART ring_2 122 163 IPR001841 -
Cca03g02964 266 MobiDBLite consensus disorder prediction 248 266 - -
Cca03g02964 266 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 266 - -
Cca03g02964 266 MobiDBLite consensus disorder prediction 206 232 - -
Cca03g02964 266 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Cca03g02964 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 170 IPR013083 -
Cca03g02964 266 MobiDBLite consensus disorder prediction 180 266 - -
Cca03g02964 266 MobiDBLite consensus disorder prediction 233 247 - -
Cca03g02964 266 PANTHER RING FINGER DOMAIN-CONTAINING 5 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02964 Cca-Chr3 51028823 51029623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02964 8 266 Rapid Response to Elicitors AT3G05200 45.977 5.51e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02964 K10664 - gmx:100781706 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02964 03 51028823 51029623 Cca02g01505 02 33614567 33615955 PCT