Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02960 ATGTTAAAGCAAGGAACGCGGAAATGGCGTGATGCTTGTGATGGCGGAAGCAGAGAGGGAGAAAGGAAGAGAGGAATGGCAGTGGCATCAATGATTCACTCACTCTCACTCATCTTCACAATCACCCTCGTTCTCATATTCTTCTTCACCGTAAACCCTCCCTCTGCAGCACGTAGGTCACTGGTCGCAATCGCATCCTGCTCCAACGAATCCAGCAATGGCCTCCTCAACTACCACTGCCTCTTCCCACAAAGCTCCACCCTCTCAATCCccaccctcatcctcttcctcctcctccacttctacatcctcatcaccaccgcgcagcgccacttctccctcgtcaccaccaagctcgcctcccacctcagcctctcccccagcatggccgccgtcacgctcctctccctcggcaacggcgcccccgacgtcTTCGCCTCCCTCGCCGCCCTCCGCGCCGGCCACTACCGCACTGGCCTCGCCGCCATCCTCTCCGCCGGCACCTTCGTCTCCGCCCTCGTCGTCGGCTTCGTCGCCATCTACGCCGCTCCCTTCGCCGTCGATCCCGCCCCCTTCGTCAGAGACCTCCTCTTCTACCTCACCGCCGCCTTCTTCCTCTTCTACGTCTACCTCTCCGCCGAGATTTTCCTCTGGCAGGCCATCGGAttcgtcgccttctacttcttcttcgtcgctttcgtcttctACATGGATTTCGGATTGCCCAATCGCAGCGTCAACACTTCCGCGGATCTCGAGGGACACGTGCAACCAGATTCCGACGTTAAACCTTCCGGATCTCGCGACGGAGACAAACGCGCTTCTGGACTGCGCGCTGCTTTTCGTTTGATTTCTAAAACATGGGAGCTTCCTGTCTCAACTCTCTTAAGGTTGACAATCCCTCAACCAGCACCATCACAATGGAACAGATTTTATGCATCAGCCAATGTTGCACTTTGTCCACTAGCCCTCTTGTATGCCTGCAACTCATTCGTGCCATTTGATCATCCCATAGTTTTCCTCCTCCCCAACACTCTCTTCCCCCTCTGGTCAGTAGTGCTCATGACAAGTTTCTCTCTTGCATTTCTTCATTATGTAATGGAAAAAGAACCCCCCAAAACAGAGCATCTACCCGTGGTCGTTGTGGCATTTATTATGAGCGTGTTTTGGATATCTACTACAGCTGGAGAGCTGGTGAACTGCCTGGAAGCTATAGGCACACTTCTCAAACTGCCGCCAGCACTCCTGGGTCTTACGGTGCTGGCGTGGGGAAATTCAGTGGGAGATCTTGTTGCTGATGTCGCAGTTGCTAAAGCCGGTCATCCGGCGATGGCAATGGCCGGATGCTTTGCAGGACCAATGTTTAACATGCTTGTTGGCCTCGGAAGTGCTTTGGTGATACAGACAGCCAATATATATCCTAGTGCCTATAAGCTAAATTTCCACGTTGGTATCGTGATCGCATTTGTATTTCTGCTTTCAAGCCTTATGGGGTCTCTCTTGGTGATCACTTGGTGCAGATTCAGAGTGCCTAGGTTTTGGGGATTCTGTCTGGTGGGTATCTATGTCGCATTCATGGCAGCGAGTTTAGTAATAGCCATGTTTTCGGGATGA 1614 0.456 MLKQGTRKWRDACDGGSREGERKRGMAVASMIHSLSLIFTITLVLIFFFTVNPPSAARRSLVAIASCSNESSNGLLNYHCLFPQSSTLSIPTLILFLLLHFYILITTAQRHFSLVTTKLASHLSLSPSMAAVTLLSLGNGAPDVFASLAALRAGHYRTGLAAILSAGTFVSALVVGFVAIYAAPFAVDPAPFVRDLLFYLTAAFFLFYVYLSAEIFLWQAIGFVAFYFFFVAFVFYMDFGLPNRSVNTSADLEGHVQPDSDVKPSGSRDGDKRASGLRAAFRLISKTWELPVSTLLRLTIPQPAPSQWNRFYASANVALCPLALLYACNSFVPFDHPIVFLLPNTLFPLWSVVLMTSFSLAFLHYVMEKEPPKTEHLPVVVVAFIMSVFWISTTAGELVNCLEAIGTLLKLPPALLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVIQTANIYPSAYKLNFHVGIVIAFVFLLSSLMGSLLVITWCRFRVPRFWGFCLVGIYVAFMAASLVIAMFSG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02960 537 Pfam Sodium/calcium exchanger protein 380 530 IPR004837 GO:0016021|GO:0055085
Cca03g02960 537 Pfam Sodium/calcium exchanger protein 95 235 IPR004837 GO:0016021|GO:0055085
Cca03g02960 537 Gene3D - 125 250 IPR044880 -
Cca03g02960 537 Gene3D - 313 531 IPR044880 -
Cca03g02960 537 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g02960 537 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 281 536 - -
Cca03g02960 537 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 68 244 - -
Cca03g02960 537 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 281 536 - -
Cca03g02960 537 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 68 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02960 Cca-Chr3 50997072 51000038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02960 29 536 Antiporters AT1G08960 65.185 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02960 K13754 - gmx:100775437 785.023