Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02959 ATGTTAGTCAGAATCGATCACACAACTTTTGTTCTCGCACTTCGCTGTCTGTCTGAGGTTCTGGGTTATCAGTGTTTAGAGAGCACAGCATCATCTCTTAGGCAAGGTAACAAAATGGATCATCAAGGGCATAGCCAGAACCCATCTATGGGGGTTGTTGGAAGTGGAGCTCAATTAGCATATGGCTCTAACCCATATCAGCCAGGCCAAATTACTGGGGCACCGGGGTCAGTTGTGACATCAGTTGGGACCATTCAATCCACCAGTCAACCTGCTGGAGCTCAGCTGGGACAGCATCAacttgcttatcagcatattcatcagcaacaacagcaccagcttcagcaacagcTCCAACAATTTTGGTCAAATCAATACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCTCCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGATATTGCTGCAGCTATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATACACTTCCATACTGCTACATGCCGCCTCAGCATGCACCCCAAGTTGGAACTGGTGGTGTCATAATGGTCTCACCCCTACATTGCGCCACAAATGTGGCCACAACCACCAGACCAACGACAGTCATCCCCGGAACATTAGCTGACATGCCATGGAAATTAAGATAA 885 0.4305 MLVRIDHTTFVLALRCLSEVLGYQCLESTASSLRQGNKMDHQGHSQNPSMGVVGSGAQLAYGSNPYQPGQITGAPGSVVTSVGTIQSTSQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADTLPYCYMPPQHAPQVGTGGVIMVSPLHCATNVATTTRPTTVIPGTLADMPWKLR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02959 294 Pfam Core histone H2A/H2B/H3/H4 107 202 IPR007125 GO:0003677
Cca03g02959 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 39 278 - -
Cca03g02959 294 SUPERFAMILY Histone-fold 111 211 IPR009072 GO:0046982
Cca03g02959 294 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 39 278 - -
Cca03g02959 294 Gene3D Histone, subunit A 101 217 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02959 Cca-Chr3 50987710 50990407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02959 39 265 CCAAT-HAP5 Transcription Factor Family AT1G08970 64.035 2.03e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca03g02959 CBFD_NFYB_HMF 7.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02959 K08066 - gmx:100782754 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02959 03 50987710 50990407 Cca02g01500 02 33569492 33571310 PCT