Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02945 ATGCAAGACATTTTCGGATCAGTTCGCCGATCACTCGTATTCCGCGGTTCGCCGGAGAACGAAGAAGCCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTACTGTATCCGAAGTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCGTCCATTCCTAAGGACGCCGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTACGTTGGAATGAATCTCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAATTACTGAAAGACCTTTCACATCCCAACATAGTTAGATATTTGGGTACAGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACTTACACGAAGCAGTTACTACTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAGCAGGTCGTTGAGCTGGCAACCATTTCCGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTTCATATAGGAACAACTAAGTCCCATCCGCCAATTCCTGATCATCTCTCAGTTGCAGCAAAAGATTTTCTGCTAAAATGTTTACAGAAGGAACCAATTTTGAGGTCATCGGCATCGGAACTGCTGCAGCATCCCTTTGTTACTGGTGAACATATGAATACTCTTCCTCTGTCATCTAATGTCACGGAAAATTTCGAAGCTTCTTCTCCATCGTGTGCCCCAAATGTTGAATCCTTCCTTTGCAGCTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAGTTGTGGGGAATGAGCAGtgatgatgatatgtgtgtgattgatgatgaCAAAGAAGAGTTCCCGCAGAGTGATGTCAAATACAAATCAATGATGTCAAATGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGCGATTAATTTTAGCACCGATGAAAGTTACATGCCACCTGATCAGTCGGGGGCTGATAAGGGTCAGAATGATTTTTCCTTTCCAGGCGTGCCATCTCTGTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAGCTGCAGACGCCTTTGTATGAAGAGTTCTATAACAGTTTGAATACATCTTGTTCTCCCAATGTGATTGATAGCATAAGTGATGATACTGCCGCTCGAAAATACTTGAAATTACCTCCTAAAAGCAGGTCACCTAGTCGGGTGCCAATTACCACTCCATCTAAAGCCGTTGATAATGCTGGAAGTCCTGGAAGTAATGGCCGGTCCTCATCAACTATTGGCCATGTAAATAACCATAGTTCACAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGAATGGTAGTTGACTCTCAGCAGCAGCCCAGTAGCCCAAGTCTAAACTTTTCCGAAAGACAGAGGAAGTGGAAAGAAGAGCTTGACCAAGAGCTTGAGAGAAAGCGAGAAATGATGCGGCAAGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAGCGGACAAGATTTGCTTCTCCCAGCAAATAA 1971 0.4526 MQDIFGSVRRSLVFRGSPENEEASLGVGGSLVDKISYCIRSSRVFSKPSPPSPSIPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPILRSSASELLQHPFVTGEHMNTLPLSSNVTENFEASSPSCAPNVESFLCSSTVNPLDSGNKQLWGMSSDDDMCVIDDDKEEFPQSDVKYKSMMSNDIESFNPMSDPSDDWGCKFDASPELENRAINFSTDESYMPPDQSGADKGQNDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIDSISDDTAARKYLKLPPKSRSPSRVPITTPSKAVDNAGSPGSNGRSSSTIGHVNNHSSQDIPASPLNEWKGMVVDSQQQPSSPSLNFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02945 656 MobiDBLite consensus disorder prediction 605 627 - -
Cca03g02945 656 SMART serkin_6 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02945 656 SUPERFAMILY Protein kinase-like (PK-like) 64 354 IPR011009 -
Cca03g02945 656 Coils Coil 607 627 - -
Cca03g02945 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cca03g02945 656 Gene3D Transferase(Phosphotransferase) domain 1 64 357 - -
Cca03g02945 656 MobiDBLite consensus disorder prediction 637 656 - -
Cca03g02945 656 Pfam Protein kinase domain 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02945 656 MobiDBLite consensus disorder prediction 538 580 - -
Cca03g02945 656 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cca03g02945 656 MobiDBLite consensus disorder prediction 530 656 - -
Cca03g02945 656 CDD STKc_MAPKKK 64 328 - -
Cca03g02945 656 ProSiteProfiles Protein kinase domain profile. 65 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02945 656 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 611 - -
Cca03g02945 656 Coils Coil 98 125 - -
Cca03g02945 656 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 611 - -
Cca03g02945 656 MobiDBLite consensus disorder prediction 587 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02945 Cca-Chr3 50896030 50901767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02945 1 656 MAP Kinase Kinase Kinase AT1G54960 56.978 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca03g02945 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02945 K20606 - gmx:100807537 1167.14