Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02942 ATGATTCAGAACGTAGCGAATGCTCTGAGCAACAACTACGACAACATGAACAAGAACGAGTGCATAAGAGGAACCGTGATCTTAATGAAGAAAAATGTGCTCGACTTTAACGACTTAAGTGCTTCCTTGTTAGATCGTCTTCACGAGTTCGTGGGCAAACGCGTTTCTCTTCAACTCATAAGTGCTGTTCAACCAGACCCTGGGAATGGCATGAAAGGAAAACTTGGGAAGCCTGCATATTTGGAAGACTGGATCACCACATTCACACCCTTGACCGCAGGCGAATCAGCATTCAGTGTTACATTTGATTGGGATGAGGATATAGGAACCCCAGGAGCATTTTTAATCAGAAATGATCATCACAGCGAGTTCTACCTAAAAACCTTGACACTTGAAAATGTTCCAGGCCACAGTGACATCCACTTTATCTGCAACTCTTGGGTATACCCTGCACATAAATATAAAACGGATCGCATTTTCTTCAGCAACAAGACATATCTTCCAAGTGAAACACCAGTGCCGCTTCTTAAGTATAGAGAAGAAGAACTAGAGAGTTTAAGAGGAGATGGAAAAGGGACCCTGCAAGAGTGGGATAGGGTCTATGATTATGCATACTACAATGATTTGGGTGATCCGGATGAAGGTCCAGAATATGCTCGTCCAGTTCTAGGAGGGTCCACTGAATATCCCTACCCTCGAAGGGGAAGAACTAGTAGACCACCTACAAAATCAGATGCTAATAGTGAAAGTAGATTGAATTTTGCCATGAGCTTGGACATCTATGTTCCAAGGGATGAGAGATTTGGTCACTTGAAATTGGCAGACTTTCTTGCTAATGCACTGAAATCCATAGTTCAAGTCATCAAACCTGAGCTGGAATCTCTATTTGATAGCACCCCTGATGAGTTTGATAGCTTTGAAGATGTATTTAAACTTTTTGAAGGTGGGATTAAGGTGCCACAAAGTATAGTTAAGAATATTAGGGATAAAATCCCTGCAGAGCTGTTCAAGGAAATTCTCCGAACTGATGGTGAAAGGTTCCTGAAGTTTCCCTTACCTCAAGTGATTGAAGCAGAGGATAAGTCTGCATGGAGAACGGATGAAGAATTTGCAAGAGAAATGCTAGCCGGTGTAAACCCTGTTATAATTCGCTGCCTCCATGAATTCCCACCAGCAAGTAAGCTTGATTCCAAAGTCTATGGCGATCAAACCAGTACAATAAGGAAAAAGCACATTGAGAGCAACATGGATGGGCTTACCGCAATCAGACACAAGAAGTTGTTCATATTAGATCACCATGATTCACTAATACCATACTTGAGGAGGATAAACTCGACTTCTTCAAAAACCTATGCCAGCAGGACAATTCTTTTCTTGAAAAATGATGGGACTTTAAAGCCATTGGCCATTGAGTTGAGTTTGCCACATCCTGAAGGAGATCAACATGGTGTCATCAGTAAAGTTTACACTCATGCAGAAGAAGGTGTTGAAAATTCTATCTGGCAGTTAGCTAAAGCTTATGTAGCAGTAAATGATTCGGGTTATCATCAGCTTATTAGCCACTGGTTGCATACTCATGCAGTGATTGAGCCATTCGTCATATCAGCAAACAGACAACTTAGCGTGCTTCACCCTATTCATAAACTACTGCATCCACACTTTCGTGACACCATGAACATAAATGCACTAGCGCGACAAATCCTCATCAACGCAGGAGGCATTGTAGAGGCCACAGTTTTTCCATCCAAGTATTCCATGGAGATGTCATCTGTGCTTTATAAGAGCTGGGTTTTTCCTGAACAAGCATTACCTGAGGATCTTATCAAGAGAGGAATGGCTGTTAAAGATTCAGGTTCTCCACATGGCCTTCGACTTGTGATTGAGGATTACCCTTTCGCTGTTGACGGGCTAGAGATTTGGTTTGCTATAAAGAAATGGGTCCAGGACTATTGCTCCTTTTACTACAAGGAAGATGACACAATCAAGAAAGACAAGGAACTTCAATCTTGGTGGAAGGAGTTAAGAGAGGAGGGTCATGGTGACAAGAAACACGAGCCTTGGTGGCCAAAGATGCAAACTCGTGAAGATCTTATTGAAGTTTGCACCATCATTATATGGGTTGCTTCAGCTCTGCATGCATCAACCAACTTTGGACAATACCCTTATGCAGGTTTCCTCCCAAACCGTCCCACCATAAGCCGAAGGTTCATGCCCGAGGAAGGGACTTCAGAATATGATGAACTTGTGAGCAACCCTGAGAAGGCTTTTCTGAGAACAATCACAGCACAGTTGCAGACTCTTATAGGCATTTCACTCATTGAAATATTGTCTAGGCACTCTTCTGATGAGGTGTACCTTGGACAGAGAGACACTCCTAACTGGACATATGATGTGGAGCCATTGGAAGCGTTTGAGAAGTTTGGAAAAAAGCTGGCACAAATTGAGGAAAAGATTGTGACATTGAACAATGATGGGAAACACAAGAACCGAGTTGGACCAGTTAACATGCCATACACCTTGCTTTTTCCCAGCAGCAAAGCTGGACTAACTGGCATGGGAATTCCCAACAGTGTTGCAATTTGA 2583 0.4262 MIQNVANALSNNYDNMNKNECIRGTVILMKKNVLDFNDLSASLLDRLHEFVGKRVSLQLISAVQPDPGNGMKGKLGKPAYLEDWITTFTPLTAGESAFSVTFDWDEDIGTPGAFLIRNDHHSEFYLKTLTLENVPGHSDIHFICNSWVYPAHKYKTDRIFFSNKTYLPSETPVPLLKYREEELESLRGDGKGTLQEWDRVYDYAYYNDLGDPDEGPEYARPVLGGSTEYPYPRRGRTSRPPTKSDANSESRLNFAMSLDIYVPRDERFGHLKLADFLANALKSIVQVIKPELESLFDSTPDEFDSFEDVFKLFEGGIKVPQSIVKNIRDKIPAELFKEILRTDGERFLKFPLPQVIEAEDKSAWRTDEEFAREMLAGVNPVIIRCLHEFPPASKLDSKVYGDQTSTIRKKHIESNMDGLTAIRHKKLFILDHHDSLIPYLRRINSTSSKTYASRTILFLKNDGTLKPLAIELSLPHPEGDQHGVISKVYTHAEEGVENSIWQLAKAYVAVNDSGYHQLISHWLHTHAVIEPFVISANRQLSVLHPIHKLLHPHFRDTMNINALARQILINAGGIVEATVFPSKYSMEMSSVLYKSWVFPEQALPEDLIKRGMAVKDSGSPHGLRLVIEDYPFAVDGLEIWFAIKKWVQDYCSFYYKEDDTIKKDKELQSWWKELREEGHGDKKHEPWWPKMQTREDLIEVCTIIIWVASALHASTNFGQYPYAGFLPNRPTISRRFMPEEGTSEYDELVSNPEKAFLRTITAQLQTLIGISLIEILSRHSSDEVYLGQRDTPNWTYDVEPLEAFEKFGKKLAQIEEKIVTLNNDGKHKNRVGPVNMPYTLLFPSSKAGLTGMGIPNSVAI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02942 860 Gene3D PLAT/LH2 domain 13 166 - -
Cca03g02942 860 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 22 166 IPR036392 GO:0005515
Cca03g02942 860 PANTHER LIPOXYGENASE 16 860 - -
Cca03g02942 860 Gene3D - 363 493 - -
Cca03g02942 860 Coils Coil 804 824 - -
Cca03g02942 860 CDD PLAT_LH2 22 163 IPR042057 -
Cca03g02942 860 Pfam Lipoxygenase 175 843 IPR013819 GO:0016702|GO:0046872
Cca03g02942 860 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Cca03g02942 860 PANTHER LIPOXYGENASE 16 860 IPR000907 GO:0016702|GO:0046872
Cca03g02942 860 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Cca03g02942 860 Gene3D - 272 362 IPR027433 -
Cca03g02942 860 Pfam PLAT/LH2 domain 61 161 IPR001024 GO:0005515
Cca03g02942 860 Gene3D - 167 271 - -
Cca03g02942 860 MobiDBLite consensus disorder prediction 212 248 - -
Cca03g02942 860 ProSiteProfiles PLAT domain profile. 22 162 IPR001024 GO:0005515
Cca03g02942 860 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 388 407 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 348 364 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Cca03g02942 860 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Cca03g02942 860 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Cca03g02942 860 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
Cca03g02942 860 SUPERFAMILY Lipoxigenase 167 860 IPR036226 -
Cca03g02942 860 SMART LH2_4 20 163 IPR001024 GO:0005515
Cca03g02942 860 Gene3D - 494 859 - -
Cca03g02942 860 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 860 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02942 Cca-Chr3 50857356 50861329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02942 15 860 Acyl Lipid Metabolism Gene Families AT1G55020 69.683 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02942 K15718 - gmx:100815550 1587.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02942 03 50857356 50861329 Cca03g02942 03 50857356 50861329 ECH
Cca03g02942 03 50857356 50861329 Cca02g01481 02 33433720 33455021 PCT