Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02941 ATGTCAGATTCACAGTCGAATTCAGAGGTTTTCAGCGTTCGAATTGTCTCCATCGACCATTACATGGCACCGCCAATCCCAGACGCCGATATCTGTTATAGTAGCTTCCATGGTGGAAAGGTGAATGAGGTGCCTGTAATAAGAGTGTATGGTTCTACTCCCGCTGGCCAGAAGACTTGCTTGCACATTCATCGAGCTTTACCCTATTTATATGTGCCGTGTTCAGATATACCACTCCAACTAGACCAAGGTGATGCATACACCTATAAGGTGGCTGCTTCTCTCGAGAGAGTCTTAAAGCTTAAAGGCAGTGCTGGTTCAACAAGACAACATGTACATGGATGCAGCTTTGTACGAGCAAGGAAATTTTATGGCTATCATTCATTTGAGGAGTTATTTGTAAAGATATACCTATATTATCCGCAAGATGTCTCCCGTGCAGCTACTCTTCTCTTGGCTGGAGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTATAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAAGTTCCGCCACCCTATACCTGACACTTGTGAGAAATTTAATATCGAAAGCCAGCAGCAGCATAGAAAGGCAGATACAGATGGTCATGCATGTTCAGAGTCAAGATTGTGGATGTCTTCCATGGTCCCATCTGAGTGGATGTGGTCTCTCCCAAACAAATTCAGTGCCTTGTCAAATGATGAGGCTCACTGTCCTAAACGCCAAAGCACCTGTGAGCTTGAAGGAGATACTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTTTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAGAAACGGACTGGAATTCAGGAGACTACCATGCCTTCTGATCCTTGCAAACCACTTCCACAAGATGTTATGAAACTTTTCTCTGTTGGTCTTGACTTCGAGAAAAAAATTATTGAATTGTGCTGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTGGGAAGGAATTGAGAGAAACAGACATAATTGGCTCATTATCACCACCAGCTTCATTATGCAAAAATGCCAAATTGCATGAGGAAGGGAATGACACAAGTCTTGAAATGTTGACCATGGATGAAATCCGATCATCTGAAATGATTGGAACGTTGGACATAAAGGCAGCTGCTGATAAGGAAGCACAAAATCTTCTAAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTGTTTATGAAACAATCTTGACTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAAGAAGCTAATATGGCTTATGAGAATGAGTCCCAAAAGGAGTGTCAGGATATTCTTGATTCAATTGATGATATGCATGTGTTGGAGTTACCAGTGGAAAAGCGTTCTCATTCCTTTGATCACAATGGTTCTATTGGAGCTTCATCAAACAGTATGCTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCAAGTCCACGCGGTGGTTTCTCTGGAACCTCTTCTCTAGTTGAGATAAATAGTGAATACAAAAGGGCTTCTGAGTACCACGTACAGCACAATACTGACACAAGTACAGTTAGTAAAGATAAAAGGAATAAACAATGGGGGTCTTTGCCTTTTTCCATGATGGATAAGGTTAATGATGTTGGAGAGCATGCTACTTTACTTGAGACTCATCCATTTGAAAGTGAGACCGGAGATTCTGCTCACTCAGGTTACTTAAACACTAATGAGGTTAGAAATAGTGCTTGTATTATAAGGAACAACGGCAAAGATACTTCAGATTCAAACTACTCTTTGCGGGAATTGATGAGGCGAAAGCGATCCTATCGTGTTGAACAAGCTGAATTTGAGTCTGGAACTACTAAAAAGCTTCTTTTGGACAAGCATAGGGAGCCAAATACATGCCTTTGGCAAAACCAACTGGATTTAAAAACAGTGCAAACTGATGAAGAAGAAAAGGAACACCAGAAGAGTTGTGGCCGCAAAGTTAGCAATCATGTTAATTTAGTGCATGGGAAACTGCCTCTTCCAGCTGTCAATGATAGTTTTTTACAAGCTACGATGCCAAAAGGCGTATGTTTTAGTCCGCATGAAATGGAAGGTGTAGAAGCAAGTAAAGTGTTGAGGAACTGTTCAAAGGGAGGGTCTTCTTTAATGCATGGTGGACCTGAAAATTTTCATTTTATTGATTCCATAGACCAATCTGTGGCTTGCATGGGTGAAAACCATAAAGTTGGCACAGCTTTTACAAAACCTATGGCTTCTGATGCCTGTACCCAAAATCATTTGTTAGACACTCGGTTAAGAACATCTGCTGTTCATACAGTCAGAGCTCCTGAGAGAAGTTTACAAACCAATTCTTCTGCTTCAAGTAGTGTGCAGAGCTCATTCATTGATAAAAATTCTGGCAAATATAATTGCATGGGTCAAAGTTCTGATGGAAACATATCTTTTGTGCAACATGATCAGATGATGTTTTATGAGAATTCCGTGGACAGAAGTGCTGCAAATGATATGCAAGTATTGTTAAGTGAAAAAGTGGATAATCAAAAGATGGATGAAAATTTGTTGCATGACACTATTGGTTCTGAACCCACCGACCTAAAGGGTAGTCACATGAAATTAGCTGAAGGCAAGAACCCCCTGGATGATAAGAATCTTGAGAGTACTTTGTCCTTGCCAACCACCTCTAATACCAATTTACATTTGGATGAGGACAGCTGTGATGAAATGCCAGGGAATGCTCTGGATGTCTTTCCTCCCATTTCTGCGAGGGATTCTCTGAAAGAGATGGAAACTTGCAACAAGTATGGTCCAATTAAAACACTTACATCTAATGGGATGAAGGGTGTCATCACTCACTATCAAAATGATGGCTCTCACCTCTACCTATTAACACCTAATATTTTGCCTCCTCCTGCAGATACTGTGCATAGATGGCTATGTTGTGATGAAAGAGAAATAGATGCAGAGGACAAGGGTGTACCTAAATGTGCTACTGAGACTGCACCTCTTCTTATGACTAAGCTGTATCAAGATGCTGATACAGAAAAGAAGCCTCCATGCACTGGAAAAGGACAAACAGAAAGAGTGAAAACATGCCTAGATGACTCGCAAGATATTTCTCAGATATCAGGTCCCGATGGAAAATCAAGTTTTACCCCTCTGAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTTACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGACGGTGATTCTATTGTTGAAGTTCTTGTTCTTTTACATAATAAATCTGGTCCTTGTCAGAGAAGTTTCGATGGTCTATCTGGCTGTAAAATATTGGTCTTTACTGATGAGAAGCTCTTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGCTATCTAGCAGAAAGGGCGTCACATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTTGATTGCTTCTGAAGATACCAAATCTTCAGAAAAAGATATCTTGGAACTGGACATCCATGATACCCCTAATCTTGATTGTTGTGTGCCAGAAAATTCAATAATTGAGGATGAATGGGGGCGGACACATGCTAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTCAACGTATGGCGATTGATACGTGGAGAAGTTAAGTTGAATTTATATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCAGAAAATTCCTTCTTTTCACCAGAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGTGCAAGATATCGATGTATCAAATATGTTACAGAGAGAGTAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGGACATCGGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTTTCTGTTCTCTCTAGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCCATCTCACCTGGAAAGCAACAGGTTGCTTCTCAACCTGCAATGGAGTGCCTACCCCTAGTAATGGAACCGGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTTTGCACTTGTCTTGGTAAAGTTGTGGCACAAAAGGCCAACACACTAGGGGTTAGTTCATTCTCACCAGAGCAGCATGTTCTGCAGGATTTAAAGGATCAAATCTTGCTCACTCCGAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGTGTACTTCCGCGCTTATTGGAAGAAATCTTAACAACTAGAATAATGGTAAAACAAGCAATAAAAAAGTTGGCACCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATAGCGAACGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCTGACAGTATTGTTCAGTGTGGCCGTAGTACACTGGAAAAAGCTATATCATTTGTAAATCTACACGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGGCGCACTATAAAAGAGTCTTTCCAAATTGGAAATGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGCCCTGTCACCCTGAAGTTGGAAAAAGTTTATCATCCGTGTTTCCTCCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGCCCTGGCCAAATTGAACCTGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGATACGTGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTTTTTGAGCATCATAATTTATTGGAGGTGAAGGTTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCTGGCAGATTCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTTGACCCTAGGTCAGAACCACGTTATGCAGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAATAAACAAATAATACCAGCTTTACAGAGGGTATTTGGGCTTGTTGGTGCTGACTTGAACCATTGGTTTTCGGAGATGCCTCGCCCCATAAGGGAAGCTTCTGTAAAGCATACATTAACTTCAAATTTCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTGTTATGTGATAGGTTGGTCCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAAGTAGCTGCTGCGACAGCACTGATTAGTAAGACATCGAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGAGGGGATAGGCTTCTCGAAAGTGGTGTGAAGTGCACGTCCATTTCATGCTTGGTGTTCTATGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCCGCAGACAAAGAATTGTATCCGAGATGCACAGTGGAATGGTTCTGA 5904 0.4097 MSDSQSNSEVFSVRIVSIDHYMAPPIPDADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHRALPYLYVPCSDIPLQLDQGDAYTYKVAASLERVLKLKGSAGSTRQHVHGCSFVRARKFYGYHSFEELFVKIYLYYPQDVSRAATLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRHPIPDTCEKFNIESQQQHRKADTDGHACSESRLWMSSMVPSEWMWSLPNKFSALSNDEAHCPKRQSTCELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIQETTMPSDPCKPLPQDVMKLFSVGLDFEKKIIELCCEAETSLFCTPSGKELRETDIIGSLSPPASLCKNAKLHEEGNDTSLEMLTMDEIRSSEMIGTLDIKAAADKEAQNLLKWLATSQAAEDINSDDELVYETILTPLLPAATIDKVLEEANMAYENESQKECQDILDSIDDMHVLELPVEKRSHSFDHNGSIGASSNSMLPQVDGSNDDEFSSPRGGFSGTSSLVEINSEYKRASEYHVQHNTDTSTVSKDKRNKQWGSLPFSMMDKVNDVGEHATLLETHPFESETGDSAHSGYLNTNEVRNSACIIRNNGKDTSDSNYSLRELMRRKRSYRVEQAEFESGTTKKLLLDKHREPNTCLWQNQLDLKTVQTDEEEKEHQKSCGRKVSNHVNLVHGKLPLPAVNDSFLQATMPKGVCFSPHEMEGVEASKVLRNCSKGGSSLMHGGPENFHFIDSIDQSVACMGENHKVGTAFTKPMASDACTQNHLLDTRLRTSAVHTVRAPERSLQTNSSASSSVQSSFIDKNSGKYNCMGQSSDGNISFVQHDQMMFYENSVDRSAANDMQVLLSEKVDNQKMDENLLHDTIGSEPTDLKGSHMKLAEGKNPLDDKNLESTLSLPTTSNTNLHLDEDSCDEMPGNALDVFPPISARDSLKEMETCNKYGPIKTLTSNGMKGVITHYQNDGSHLYLLTPNILPPPADTVHRWLCCDEREIDAEDKGVPKCATETAPLLMTKLYQDADTEKKPPCTGKGQTERVKTCLDDSQDISQISGPDGKSSFTPLSQIGFRDPASVGCGQQLTLLSIEILAESRGDLLPDPQFDGINIVALGFQNDGDSIVEVLVLLHNKSGPCQRSFDGLSGCKILVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGYLAERASHLGLGLLNNLSRTPSESLIASEDTKSSEKDILELDIHDTPNLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRQKIPSFHQKVLTKWFSSGPGRARYRCIKYVTERVKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVAQKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILTTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLRGRTIKESFQIGNEIASAITAMNPSPVTLKLEKVYHPCFLLTKKRYVGYSYESPGQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHHNLLEVKVYLQRQWKRILSGRFCLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDPRSEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNHWFSEMPRPIREASVKHTLTSNFHRTRIDYYYLSKHCVLCDRLVQASARLCNQCSENEVAAATALISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAATHVAADKELYPRCTVEWF 1967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02941 1967 CDD POLBc_zeta 1381 1829 - -
Cca03g02941 1967 MobiDBLite consensus disorder prediction 498 531 - -
Cca03g02941 1967 CDD DNA_polB_zeta_exo 1105 1355 - -
Cca03g02941 1967 ProSitePatterns DNA polymerase family B signature. 1600 1608 IPR017964 GO:0000166|GO:0003676
Cca03g02941 1967 Gene3D Helix hairpin bin 1499 1559 - -
Cca03g02941 1967 Pfam DNA polymerase family B 1374 1821 IPR006134 GO:0000166|GO:0003677
Cca03g02941 1967 Gene3D - 1675 1840 IPR042087 -
Cca03g02941 1967 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1960 IPR030559 GO:0006281|GO:0016035|GO:0019985
Cca03g02941 1967 Pfam DNA polymerase family B, exonuclease domain 1106 1245 IPR006133 -
Cca03g02941 1967 Pfam DNA polymerase family B, exonuclease domain 55 208 IPR006133 -
Cca03g02941 1967 Gene3D - 1140 1416 IPR036397 GO:0003676
Cca03g02941 1967 SUPERFAMILY Ribonuclease H-like 27 1379 IPR012337 -
Cca03g02941 1967 MobiDBLite consensus disorder prediction 500 531 - -
Cca03g02941 1967 Pfam C4-type zinc-finger of DNA polymerase delta 1866 1939 IPR025687 -
Cca03g02941 1967 Gene3D Palm domain of DNA polymerase 1419 1664 IPR023211 -
Cca03g02941 1967 SUPERFAMILY DNA/RNA polymerases 1420 1834 IPR043502 -
Cca03g02941 1967 PRINTS DNA-directed DNA-polymerase family B signature 1598 1606 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g02941 1967 PRINTS DNA-directed DNA-polymerase family B signature 1542 1554 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g02941 1967 PRINTS DNA-directed DNA-polymerase family B signature 1433 1446 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g02941 1967 SMART polmehr3 1106 1612 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g02941 1967 Gene3D DNA Polymerase, chain B, domain 1 30 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02941 Cca-Chr3 50834485 50855883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02941 1144 1949 Core DNA Replication Machinery Family AT5G63960 29.356 6.07e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02941 K02350 - gmx:100777934 3359.31