Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02939 ATGGCACCAAAGAAGAAGCCTAGAGCTACGAATAAGCCGTTATCAATTTTGGAGGTTTCTCATGAGGAAGATGAAGCTGGCTCTAGTAGGCAACGGAAGAAAAAGTTGTCTGATAAATGGGAACCTAAATGGAACGAGGAGGAACTAAAGCAGTTTTATGAAGCGTACAGGAAGTTTGGTAAAGACTGGAAGAAGGTGGCTGCAGTTGTAACTAACAAATCTGTCAAAATGGTGGAGACTCTTTACAATATGAATCGGGCATACCTATCTCTTCCGGAGGGGGTAGCTTCTGTTGTTGGCCTAATTGCAATGATGACAGATTACTATAATGTGATGGAAGACAGTGATAGTGAAAGTGAGAGCAATGATGTTCGAGGATCTCAAAAACCTATTAAACAAAAATGTCGCAAAAATCAGCTTAGGGTCACTAATGATTCTGTCCAATCTCAATCAATTGCTTTCAATGAAGGTAACCGACCACGGGCAGTTGGGAAAAGGACGCCTCGTTTCTCAGTTGACTACTCTTATAAGAACAAGGATAGGGAAAATAATGTTTTGCCTAATGAAAGAAACCCAAAGTCAGAGTTTGGTGCTAATGATGGCGAAGATGCGATTGAACTTGTACGTATTTCGACTTTGGCATCAGCTGAGGTTGCACAAGGAGGTGACTGTCCCAGAGTATCTCAAAAGCTGCCATACAAAAGAACAAAGCAGAAAGTCGCTCCTGTTCAGAGGGGGCAAAGAATGCACCAAGAGTCTGAGATAGTTCCTGCCAAGTTTTATGATGCTTCTATTGATGAAGAGTGCTTGGAAGATAGAATAGAAAGTAGGGGAGCTGAAAAAGGTGAATGTGCTAGAGATACTGATTCCTTATTGAACATGGAAGGCATAGGCACTTGTGCTTTACCTGAAGGCACATCAACAAGCCAAAACAGAGAGAGAATTAAACTTCCGAGTCTTAAACAAAAGGTCCATCATGCAGTCCCTGGAGTTGGTTCATCAACTAAACTTAGAAGTAGACGTAAGACAATTTTACAGAGATCATTCACACGTAAAGAGAAATCTTCTGAGAACATATTGAATAGTGAACCTAATAAATATTTGACCCTTGAAAAGCTTTCTGTTTGCTTGTCGTCCTATATGGTTCGTAGATGGTGTATGTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTTCCAAAAGCGAGTTCACGGAATACTTAAATCAAGTTGATCTAGGGAGAATCCCAAGGCTAACTCGTGTTGAGTGGAATATCATAAAATGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTTTATGGAGAAAGACAAAAAGTTAAACTGTACCGGGAATCTGTTCGGAAATATTACAATGAACTGTGGACTGGCATCAGAGATGGACTTCCATCGGATTTGGCTAAACCATTATGTGTTGGACAAAGAGCGATTGCTTTCCACTCAAAAACAAGAGAGATTCATGATGGGAGTGTGCTTGAAGTTCACCATGACAAGTACAGTGTTCAGTTTGACTGTCCTGAATTGGGTGTTGAACTTGTCATGGACATTGATTGCATGCCTTCAAATCCGTTGGATAATATGCCAGAAACTCTAAGGTGGCAGTTTGGTTCTGGTAATGTCCCTTGTATGAGGGAAAAAAAAGACATGAAAGAAAAATCACGTTTTGGAGGCTGCATGACAAGTGCTTCAAGTGGACTTATGGAAAAGGCAGCCTCATCTTCAAGTACTATGGCTAAGCACAAAAAGGTTGGGCTGCTTATAAATAAAAATTATCAAAGTTCAATCTTTAAAACTGTCTGTTTTGACATGGAAGCAACTTACGGTTTATTATTTTATTTTCAGGTTTCTAAACCGGTGCTTCATTTGAAGCAACGTAATACTTACTTGAGAAACTCTCAGCCACCACGGATGATAGATGGTTCTCTGGTACAAGAGTTCCCATCAAGTGTCGAAATTATTAAAGAATCCATTCTTAGAGCACATGCTATGGTGGATGCTGCATTTAAGGCATTGTCTTCGACGAGGGAAGGTGAATATGCTTTCACGAGGACTGGGCAGGTACGGTCAATTTTCTGTTCATCGGAGCCTCTACTCAATGATACATCTGGTCAAGAAGTGCATAATAAAGTCGATACTCAAATTCCTTTGGACCTTATAACTTCCTGTGTCGCCACATGGATCATGATACAGACTTGTATTGAACAACAATATGCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCTGTTACCAGCCTGCGTCCACGCAGTCCACGAAACCTTGCTGTTTACAGAGAAATTCAAAGCCTGGCTTTAAGGATCCATCGTGGAATCTGA 2367 0.4073 MAPKKKPRATNKPLSILEVSHEEDEAGSSRQRKKKLSDKWEPKWNEEELKQFYEAYRKFGKDWKKVAAVVTNKSVKMVETLYNMNRAYLSLPEGVASVVGLIAMMTDYYNVMEDSDSESESNDVRGSQKPIKQKCRKNQLRVTNDSVQSQSIAFNEGNRPRAVGKRTPRFSVDYSYKNKDRENNVLPNERNPKSEFGANDGEDAIELVRISTLASAEVAQGGDCPRVSQKLPYKRTKQKVAPVQRGQRMHQESEIVPAKFYDASIDEECLEDRIESRGAEKGECARDTDSLLNMEGIGTCALPEGTSTSQNRERIKLPSLKQKVHHAVPGVGSSTKLRSRRKTILQRSFTRKEKSSENILNSEPNKYLTLEKLSVCLSSYMVRRWCMFEWFYSAIDYPWFSKSEFTEYLNQVDLGRIPRLTRVEWNIIKCSLGKPRRFSEHFLYGERQKVKLYRESVRKYYNELWTGIRDGLPSDLAKPLCVGQRAIAFHSKTREIHDGSVLEVHHDKYSVQFDCPELGVELVMDIDCMPSNPLDNMPETLRWQFGSGNVPCMREKKDMKEKSRFGGCMTSASSGLMEKAASSSSTMAKHKKVGLLINKNYQSSIFKTVCFDMEATYGLLFYFQVSKPVLHLKQRNTYLRNSQPPRMIDGSLVQEFPSSVEIIKESILRAHAMVDAAFKALSSTREGEYAFTRTGQVRSIFCSSEPLLNDTSGQEVHNKVDTQIPLDLITSCVATWIMIQTCIEQQYAPADVAQILDSAVTSLRPRSPRNLAVYREIQSLALRIHRGI 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02939 788 MobiDBLite consensus disorder prediction 1 40 - -
Cca03g02939 788 MobiDBLite consensus disorder prediction 222 251 - -
Cca03g02939 788 SUPERFAMILY Homeodomain-like 43 88 IPR009057 -
Cca03g02939 788 ProSiteProfiles SANT domain profile. 39 75 IPR017884 -
Cca03g02939 788 CDD SANT 43 78 IPR001005 -
Cca03g02939 788 PANTHER LIN-9 329 786 IPR010561 GO:0006351|GO:0017053
Cca03g02939 788 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 329 786 IPR028306 -
Cca03g02939 788 MobiDBLite consensus disorder prediction 17 40 - -
Cca03g02939 788 Gene3D - 5 98 - -
Cca03g02939 788 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 305 IPR028306 -
Cca03g02939 788 Pfam Myb-like DNA-binding domain 43 79 IPR001005 -
Cca03g02939 788 Pfam DIRP 390 490 IPR033471 -
Cca03g02939 788 MobiDBLite consensus disorder prediction 115 142 - -
Cca03g02939 788 SMART sant 40 88 IPR001005 -
Cca03g02939 788 SMART DIRP_2 391 492 IPR033471 -
Cca03g02939 788 PANTHER LIN-9 1 305 IPR010561 GO:0006351|GO:0017053
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02939 Cca-Chr3 50807008 50819993 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g02939 DIRP 5.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02939 - - ccaj:109795661 1140.18