Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02938 ATGTTTGCTTCAGTTGCGGATACGGCAAGTGAGGGGAGTGGAGTTTTGATTCCTCAGCGCTTTGTTTGGCCTTATGGGGGAACCAGGGTGTTTCTTAGTGGTTCCTTCACGAGATGGTCGGACCATATAGCTATGTCTCCGATGGAGGGATGCCCTGCTGTGTTTCAAGTTGTCTGTAACTTAATGCCGGGACATCATCAGTACAAATTTAATGTAGATGGTGAATGGCGGCATGATGAGCAGCAGCCATCTGTAAGTGGGACCCATGGAGTAGTCAATACTATGTGTTTATTTAGAGAACCAGATATCTTACCTGCCTTAAATACTGAAGCACCTGGTAGATCCCACATGGAGGTTGACAATATGGAAGCTAATCCCAGGATGCCTGTGTCTGATCTGGAGGCCTCTCGCCACCGTATATCCGAATTCCTATCCACACATACTGCATATGATTTGCTTCCAGAGTCAGGGAAGATCATTGCCTTGGATATGAATTTACCAGTTAAACAAGCATTCCATGTTCTATATGAACAGGGTGTATCTATGGCACCACTATGGGATTTTTGCAGGAGCCAGTTCGTTGGAGTCCTTAGTGCAATGGACTTCATTCTAATATTGAAAGAGCTGGGGAGTCATGGTTCAAATCTGACTCAAGAACAACTCGAGACTCATACTATCGCAGCCTGGAAAGAGGGAAAATTACAACAATACAGAACACTTGATAGTAATGGGGGATCATATCCTTGGCGATTTGTTCATGCTGGACCCCATGAATGTCTAAAAGATGTGGCTTTGAAGGTTTTGCAAAACAAGGTTTCAACCGTTCCTATCATCCATTCTTCTTCAGAGGATGGTTCATTTCCTCAACTGCTACATCTTGCATCCCTATCAGGAATACTAAAAAGTATATGCAGGCATTTTAAACATTCCTTGAGTTCTTTGCCCATTCTTCAACTTCCTGTGGGTTCAATACCTTTGGGTACATGGATGCCTAAAGTTGGGGATCCAAATGGACGGCCACTAGCAATGCTGAGCCCAAATGCTTCTGTTGGTGCTGCTCTGTCTATGTTTGTTCAAGCTGATGTTAGCTCAATACCGATTGTGGATGATAATGATTCATTGCTTGACATGTATTCAAGAAGTGATATTACTGCATTGGCCAAAGATAAAGCTTATGCTCGGATATCTGTCGATGAAATTAGTATTCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCACCTTATGGGCTTTATCACGGCCACAGATGTCACATGTGTTTGAGATCTGATTCATTGTACGAAGTGATGGTGCGGTTGGCTAATCCTGGGGTTAGGAGACTCGTGGTTGTGGAGGCTGGCAGCAAGCGTGTGGAAGGGATAATTTCTTTAAGTGACGTGTTCAGATTCTTGTTAGGCTAG 1422 0.4374 MFASVADTASEGSGVLIPQRFVWPYGGTRVFLSGSFTRWSDHIAMSPMEGCPAVFQVVCNLMPGHHQYKFNVDGEWRHDEQQPSVSGTHGVVNTMCLFREPDILPALNTEAPGRSHMEVDNMEANPRMPVSDLEASRHRISEFLSTHTAYDLLPESGKIIALDMNLPVKQAFHVLYEQGVSMAPLWDFCRSQFVGVLSAMDFILILKELGSHGSNLTQEQLETHTIAAWKEGKLQQYRTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEDGSFPQLLHLASLSGILKSICRHFKHSLSSLPILQLPVGSIPLGTWMPKVGDPNGRPLAMLSPNASVGAALSMFVQADVSSIPIVDDNDSLLDMYSRSDITALAKDKAYARISVDEISIHQALLLGQDANSPYGLYHGHRCHMCLRSDSLYEVMVRLANPGVRRLVVVEAGSKRVEGIISLSDVFRFLLG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02938 473 Gene3D - 131 312 IPR046342 -
Cca03g02938 473 Gene3D - 320 473 IPR046342 -
Cca03g02938 473 CDD E_set_AMPKbeta_like_N 18 93 - -
Cca03g02938 473 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 12 473 - -
Cca03g02938 473 ProSiteProfiles CBS domain profile. 330 394 IPR000644 -
Cca03g02938 473 SUPERFAMILY E set domains 17 95 IPR014756 -
Cca03g02938 473 Pfam CBS domain 339 384 IPR000644 -
Cca03g02938 473 Pfam CBS domain 424 472 IPR000644 -
Cca03g02938 473 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 12 473 - -
Cca03g02938 473 SUPERFAMILY CBS-domain pair 326 472 IPR046342 -
Cca03g02938 473 Pfam Glycogen recognition site of AMP-activated protein kinase 17 100 IPR032640 -
Cca03g02938 473 SMART cbs_1 340 388 IPR000644 -
Cca03g02938 473 SMART cbs_1 158 207 IPR000644 -
Cca03g02938 473 SMART cbs_1 423 472 IPR000644 -
Cca03g02938 473 SUPERFAMILY CBS-domain pair 138 309 IPR046342 -
Cca03g02938 473 Gene3D Immunoglobulins 14 97 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02938 Cca-Chr3 50797557 50805706 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02938 - - gmx:100814655 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02938 03 50797557 50805706 Cca02g01480 02 33422499 33431692 PCT