Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02934 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGTTTCTCTACTGAGAATACCACTGGAGATCATGCAGCTGTTAAACAGCAATTAGAGATGCTTGGCCAGCTCCATAGTCCAAATTCCAACACTTCAACTACAACAAATAATAGCAACGGATCAAACACAAATTCACAACCACCTGTTACTGTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCAAACACCCTAGTGGCCACAAACCGGTTCGTATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAACTACACCGGCGAGGCCATAACCTGCCGTGGAAGCTGAAACTGAGAACCACCACAGAAGTTCGAAAACGGGTTTATGTTTGTCCAGAACCCTCTTGTGTCCACCACAACCCTGCTCGAGCACTAGGCGATCTCACTGGCATTAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAGTCTGATTGGAAAGCACATTCCAAAATATGTGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACCCACAGAGCTTTCTGCGATGCTCTGAATGAGGAGAACGACAAATTCAACGAGGGACAATTACCAAATATGCATGGCTCAAACTTGCAACCACCGATAATCCCAAACATAGTTGCATCATTACCAATCAATACCAACAATCACAACAAACACCCATTACCACTCCCTCACGATCTCATGAACATCACAATGCCCACAAAACCCTTCAACAACATGGCAGCATTCACGAGAAACCTTTCATCTCCCTCTCAACTAACCTCAAACTCACCAAACAACATGTTCGAGGAAAATAATAATGGTCTCCATTCACCACACATGTCCGCCACAGCATTGCTCCAAAAAGCTGCACAAATGGGAGCAACAGTGAATAGCAACATGATGAGTGATCAGAAAAGCTTTAGCACGAGCATGGCACCACCATCATATGGGATCATGAACCATACCATGCAAAATGGTCAACAAGACTTGTCTCACTATAATTTCAATGCGAATGAGATGGGAATAATGAGTGGGTTAGACATGTTTAATGTTATATTGGATCAAAGTAAGGCCTTGTCGAAGATGATCGAGCAGAACAATATTCGAAGCAGTAATGGGGTTTTGCATGCAATGAATAATGGTAATGGTACTAGGTCAAGTGGTTCCATTGATGTTGGTGGAACTAAAGGGAGTGAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGAGGAGGTGGTGGTGATGGCAATTTCTATGGTGGTGACCAATTACAACAATCAGAAATGGCTGCTAGAGATGAAATTTGGAGAAATTGGTCGAATAAGAATGCAGGGCTTGAACCATTTTCAGCGACAAACAGCAACATATGA 1488 0.4288 MSNSNITSCDSWSFSTENTTGDHAAVKQQLEMLGQLHSPNSNTSTTTNNSNGSNTNSQPPVTVKKKRNLPGNPDPSAEVIALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALNEENDKFNEGQLPNMHGSNLQPPIIPNIVASLPINTNNHNKHPLPLPHDLMNITMPTKPFNNMAAFTRNLSSPSQLTSNSPNNMFEENNNGLHSPHMSATALLQKAAQMGATVNSNMMSDQKSFSTSMAPPSYGIMNHTMQNGQQDLSHYNFNANEMGIMSGLDMFNVILDQSKALSKMIEQNNIRSSNGVLHAMNNGNGTRSSGSIDVGGTKGSEDVMTLDLLGIGGGGGGGDGNFYGGDQLQQSEMAARDEIWRNWSNKNAGLEPFSATNSNI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02934 495 Pfam Zinc finger, C2H2 type 93 115 IPR013087 -
Cca03g02934 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Cca03g02934 495 Gene3D Classic Zinc Finger 89 116 - -
Cca03g02934 495 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 28 452 - -
Cca03g02934 495 MobiDBLite consensus disorder prediction 36 63 - -
Cca03g02934 495 SMART c2h2final6 169 189 IPR013087 -
Cca03g02934 495 SMART c2h2final6 134 164 IPR013087 -
Cca03g02934 495 SMART c2h2final6 93 115 IPR013087 -
Cca03g02934 495 Gene3D Classic Zinc Finger 148 226 - -
Cca03g02934 495 MobiDBLite consensus disorder prediction 36 76 - -
Cca03g02934 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 452 - -
Cca03g02934 495 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Cca03g02934 495 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02934 Cca-Chr3 50710100 50714217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02934 50 461 IDZ Gene Family AT3G50700 45.987 7.44e-113 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02934 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02934 - - gmx:100776872 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02934 03 50710100 50714217 Cca03g02934 03 50710100 50714217 ECH
Cca03g02934 03 50710100 50714217 Cca02g01474 02 33346677 33350826 PCT