LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g02929	ATGGGTCTTGGTTCTGAGGCTCACAGCATGATTTTCATCATTACCATAATGATGTTCCCATCATTGCAAAGAGCCAACATTTTGACCGTGGATGCTACGTTGAATGCAGCAGGAAATGAAAACCATGTCAAGAAAATCTCAGGAATGGAAGAGAATGAAAACAAGCATACTCCTATAGTGGAAAACTTTAAAGCTTTGTTTGGACTCGACAGGTTCAACACAAGAAGACCATACTCTAGCGTCTCTGACTCTGACTTTGTGTCCCTCTCACATTCTGAGTCTCCCAACACCAAAACTGAGGCTCCAAGTCCAAGATATCACTCACATAGGAACATGCCACTTAACAATATTCAACAACAAGATAGAGGCGTGGCAAAAAGAACAACACTAGTGGCTGTTTTAGTACCTGGTGGAGTTGCTGCATTGATTTGTGCACTTGCGTGTGTATGCGTTTGCAGGAAATTCAGAACTCAGAAGAAGAAACCCAATAGGACAATACCACTCTCTAGCAACAACGGGAGAACAAAAGGTACTTGCCAAAATTCATCAAGCAATGTGAGTTTCAACCCTGACCCTGATCTGTTTTACCTCACTTGTTTGAAACAAACTTGTGACACACAAAATAGCACTTCAAGCCATGGTTCCCTAAATCGTACAATTTATGAGAAGCAAGTGGCACGTCAATGTGACTATGCTAGCTCTACCAGTTCTTCCACTAATGAAATTCTCTCTGTTCATGAGGATTTGGAATATGATGGTGGCTGCAAAGCTTCCTATGTAGAAAAAACTGTCACCGGAGAATACCGTTCATCAGATAACGAAAGTTTTCATTCATGTGTTGACTCACATTCATCAATAAGTGAAACAGAAACTCTCTCTCTTTCTCCCAGAAACTTAATTTCTTCAACAAATCAATTTCCTTGCTCCCCTCAGAATTCAACTTCAAAGTTAAAATCTAACCAATCACCTTGCGGTCCAAAACATGAAGAGCAAAAGAAGACTGAAATTTCTCATCCTAGCAATAGCATTCCTCCACCTCCATGCCCACCTTCATTTTTAAAAGGAAACATTAACAGTGTCAAATCTCCTCTGCCAAAACTCAAACCACTTCATTGGGACAAAGTAAGAGCCACGCCAGATCGAACAATGGTTTGGGATAAGCTACGAACAAGCTCGTTCAAGTTGGATGAGGAAATGATTGAATCACTTTTCGCCTACAATTTACAAAATTCAATGAAGAACGATGAAACGAAAAGCAAAAGCCCGTCTCATGGCATGCACGTACTTGAGCCAAAACGGTTGCAAAACATAGCAATATTGTCAAAAGCTCTAAATACCACAGCTGAACAAGCATGCGATACCCTGGCACTAGGGAAGGGCTTGTCTTTGCAACAACTGGAGGCACTGGTGAAAATGGCACCCACGAAGGAAGAAGAAGCTAAGCTCTTAACTTATAAAGTTAACGAACTGGGGTCGGCGGAAAAGTTTGTGAGAACAATGCTTAGCATACCATTTGCCTTTCAACGAGTGGAAGCCATGCTTTACAGAGAGACTTTCGAAGATGAAGTAGTTCACCTCTGTAACTCTTTTTCAACGCTAGAGGAAGCATGCAAGGAACTAAGGTCAAGCAAGTTCTTCTTGAAATTATTAGAAGCAGTGCTGAAAACAGGGAACCGCATGAACGTTGGAACAATCAGGGGAGGTGCCAGAGCCTTCAAACTCGATGCACTTCTCAAGCTTGCTGATGTTAAAGGAACTGATGGTAAAACCACTTTGCTTCATTTCTTTGTTCAAGAGATTGTTCGCTCAGAAGGAATGAAAGCTTCAGAGAGCATCATGGGGCAGAAAAGTGAAAACAGAACTGAGGAAGAGAAGGAAGAAGTTTACAGAAGAATGGGAATAAAATTTGTTTCTGGTCTGAGTGCCGAGTTATGCAATGTTAAGAAGGCAGCCACAATTGACGTGGATGTTCTTGCATGTTCTATATCGAACCTATCAAGTGGAATGGCTAACATGCAGAAAATGGTAAAGGCTTTGTTGTGTGAGGATGAAAAGAGTGAGAGGTTTGTCGTTTCTATGAAATGTTTTCTGAGTTATGCAGAAAGGAAGGTGCAGGATTTGCAAGGAGATGAAGGTAGAGTCATGGGTCGAGTCAGGGAAATAACTGAGTATTTTCATGGGGATGTGAGTAAAGATGAGCCGAATCCACTTCGAATCTTTGTGATCGTGAGGGACTTCTTGGAGATGGTAGATAATGTGTGTAATGAACTTAGAAGGTCTATCAAATCCCCTCGCACCATTTGGATACAGTAG	2313	0.415	MGLGSEAHSMIFIITIMMFPSLQRANILTVDATLNAAGNENHVKKISGMEENENKHTPIVENFKALFGLDRFNTRRPYSSVSDSDFVSLSHSESPNTKTEAPSPRYHSHRNMPLNNIQQQDRGVAKRTTLVAVLVPGGVAALICALACVCVCRKFRTQKKKPNRTIPLSSNNGRTKGTCQNSSSNVSFNPDPDLFYLTCLKQTCDTQNSTSSHGSLNRTIYEKQVARQCDYASSTSSSTNEILSVHEDLEYDGGCKASYVEKTVTGEYRSSDNESFHSCVDSHSSISETETLSLSPRNLISSTNQFPCSPQNSTSKLKSNQSPCGPKHEEQKKTEISHPSNSIPPPPCPPSFLKGNINSVKSPLPKLKPLHWDKVRATPDRTMVWDKLRTSSFKLDEEMIESLFAYNLQNSMKNDETKSKSPSHGMHVLEPKRLQNIAILSKALNTTAEQACDTLALGKGLSLQQLEALVKMAPTKEEEAKLLTYKVNELGSAEKFVRTMLSIPFAFQRVEAMLYRETFEDEVVHLCNSFSTLEEACKELRSSKFFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIVRSEGMKASESIMGQKSENRTEEEKEEVYRRMGIKFVSGLSAELCNVKKAATIDVDVLACSISNLSSGMANMQKMVKALLCEDEKSERFVVSMKCFLSYAERKVQDLQGDEGRVMGRVREITEYFHGDVSKDEPNPLRIFVIVRDFLEMVDNVCNELRRSIKSPRTIWIQ	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g02929	770	MobiDBLite	consensus disorder prediction	302	353	-	-
	Cca03g02929	770	Pfam	Formin Homology 2 Domain	360	751	IPR015425	-
	Cca03g02929	770	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	344	762	-	-
	Cca03g02929	770	MobiDBLite	consensus disorder prediction	302	322	-	-
	Cca03g02929	770	MobiDBLite	consensus disorder prediction	162	184	-	-
	Cca03g02929	770	MobiDBLite	consensus disorder prediction	80	111	-	-
	Cca03g02929	770	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	357	770	IPR015425	-
	Cca03g02929	770	PANTHER	FORMIN-LIKE PROTEIN	290	759	-	-
	Cca03g02929	770	PANTHER	FORMIN-LIKE PROTEIN	41	287	-	-
	Cca03g02929	770	MobiDBLite	consensus disorder prediction	80	102	-	-
	Cca03g02929	770	SMART	it6_source	357	765	IPR015425	-
	Cca03g02929	770	Gene3D	Formin, FH2 domain	380	765	IPR042201	-
	Cca03g02929	770	PANTHER	FORMIN-RELATED	41	287	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Cca03g02929	770	PANTHER	FORMIN-RELATED	290	759	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g02929	Cca-Chr3	50669767	50673612	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g02929	341	758	FH2 protein (formin) Gene Family	AT3G05470	68.779	0.0	583

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g02929	-		-	gmx:100805407	1092.03