Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02917 ATGGACATTGCCTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGCTGGTAAAGCTGGTGCTCTCGGTGACACTGTTAACGTTACCCGTGAGAAGACCAAGATCACCGTCACCTCCGACAGTAACTTCTCCAAACGGTATTTGAAGTACTTGACTAAGAAGTACTTGAAGAAACACAATGTGCGTGACTGGCTCAGAGTGATTGCTTCAAACAAGGATAGAAGTGTTTATGAACTGAGTTGTTGTCGCTGTCGCATCCCAATCCCAACAATGCATACTACCAACCCGTGCCCTATTATTCTCTATCAAACATTGCTCCTAAACTTGCAATCAACCAAGTCGTTAGTGCCACCACTGTCGCCTACCATGCCCTTCTCGTTGTCGACAACTTCGTCTCCGTGTGGAAGGTCTCCCACAACGCACTCTTGA 432 0.4676 MDIASLEKFLQERIKVAGKAGALGDTVNVTREKTKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELSCCRCRIPIPTMHTTNPCPIILYQTLLLNLQSTKSLVPPLSPTMPFSLSTTSSPCGRSPTTHS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02917 143 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 81 - -
Cca03g02917 143 PANTHER 60S RIBOSOMAL PROTEIN L22 1 81 IPR002671 GO:0003735|GO:0005840|GO:0006412
Cca03g02917 143 Pfam Ribosomal L22e protein family 1 81 IPR002671 GO:0003735|GO:0005840|GO:0006412
Cca03g02917 143 Gene3D - 1 86 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02917 Cca-Chr3 50563275 50565362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02917 1 80 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 85.000 1.57e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02917 K02891 - jre:109012705 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02917 03 50563275 50565362 Cca02g01454 02 33122713 33124590 PCT