Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02911 ATGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAAAAGACCAAAAGAACAGCACCCAAGTCCAATGACATCTACCTCAAACTACTTGTCAAGCTCTATCGGTTCGTTGTTCGGAGGACTGGCAGCCGTTTTAGTGCTGTGATACTCAAGCGCTTGTTTATGAGCAAGGTTAACAAGCCTCCAATTTCGTTGTCAAGGTTGATCAAGTATACAAAGGGGAAGGAAGATAAAATTGCTGTTATAGTGGGGACTGTAACTGATGATATCAGGGTATATGAAGTTCCAGCATTGAAAATTACAGCACTCAGGTTTACTAAAAGAGCGCGGGCTAGAATTGAAAAGGCTGGCGGTGAATGCTTGACATTTGAGCAGCTTGCCCTAAGGGCTCCTTTGGGTCAGAATACGGTCCTTCTTAGAGGCCCCAAGAATGCTCGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTCCCACACAGCCATACCAAGCCCTATGTAAGAGCTAAGGGAAGAAAGTTCGAGAGGGCTAGAGGAAGGAGGAACAGCAGAGGATTTAGAGTTTAA 564 0.4628 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFVVRRTGSRFSAVILKRLFMSKVNKPPISLSRLIKYTKGKEDKIAVIVGTVTDDIRVYEVPALKITALRFTKRARARIEKAGGECLTFEQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02911 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Cca03g02911 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Cca03g02911 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Cca03g02911 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Cca03g02911 187 Gene3D - 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02911 Cca-Chr3 50518789 50521042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02911 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 76.882 1.66e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02911 K02883 - gmx:100527681 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02911 03 50518789 50521042 Cca03g02911 03 50518789 50521042 ECH
Cca03g02911 03 50518789 50521042 Cca02g01451 02 33088634 33091106 PCT