Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02906 ATGGGGGCAGATGGACAGAGTAGGCGAATCGCCATCATTGGCGTTTCGACATTCTTGTTGGTGGCTATGGTCGTGGCCGTGACGGTAAGCGTAAACATTAGCAACAAGGAAACGAGTGGAAATGAAAAGGAAGAAAGCAAAACCCGCGTAGCTTCCACGATGAAAGCCGTGAAAACCCTTTGCGCACCCACGGATTACAAGGAGGACTGCGAGGAGAGTCTCACTGCACACGCCGGCAACACCACCGACCCAAGAGAGCTCATCAAGATCGCATTCAACGTGACCATCGGCAGAATCAGCGACGGGCTCCAGAAAACGCAGTTCATGCACGAGGCTGAGAACGACCCCAGAACCAAGGAAGCACTCGACGCATGCAAGCAACTCATGAACCTTTCCATGGGGGAGCTCAGGAGGTCGCTTGAGAAATTCAACAAGTTCGACCTCAACAACCTCGACGCCATCCTCACGAGTCTCAAGGTCTGGCTCAGCGGCGCGATCACGTACCAGGAAACATGCCTCGATGCGTTCGAGAATACCACAACTGACGCTTCCCACAAGATGCAAGATCTCTTGCAAGCTGCCATGCACATGAGTAGCAATGGCCTCGCTATCATTACCGAGCTGTCAAAAACTCTCTCAGAAATGCATGTCACCAAACCCGGGCGCCGCCTCTTGAAGGACGTTGATGATTTGTCTGTTCTTGGTCACGAAGATGATGAGTTGTTTGAGCTTCCCGAGTGGGTTGAAGATCGCGCTGGGGTTCGCAGACTCCTTCATATGACTGGACGGAAACACATGGCTAATGTGGTCGTTGCCAAGGATGGCAGTGGAAATTTCACCACCATCAATGAGGCTTTGCAGCACGTGCCTACGAAGAACGTAAGGCCATTCGTTATCTACATCAAGGAGGGTGTTTACAATGAGTACGTCGAAGTTTACAAAAACATGACCCATGTCGTTTTCATTGGTGATGGTGGTAAAAAATCAAGAATCACTGGAAACAAAAACTTCATCGATGGGGTGGGGACCTACAGAACAGCTAGTGCTGCCATTTCTGGAGATTTCTTCGTTGCCATAGGTATGGGATTTGAGAACTCGGCTGGTGCTGAAAAGCATCAAGCAGTGGCCTTGAGGGTTCAATCTGACAGGTCGATCTTCTACAAATGTAGAATGGATGGGTACCAAGACACACTTTACGCCCACACCATGCGTCAGTTCTACCGTGACTGCATCATTTCAGGAACCATCGACTTTGTCTTTGGTGATGCAGTGGCTGTTCTCCAAAACTGCACTTTTGTGGTTCGGAAGCCATTGGAAAACCAACAATGTATCGTGACCGCACAAGGCAGGAAAGAGAAACACCAACCATCGGGTTTGGTCATCCAAGGAGGGGCCATTGTGTCAGACCCCAAGTACTACCCAGTTAGGTTCGACAACAAAGCCTACTTGGCTCGTCCATGGAAAAATTACTCAAGGACCATCTTCATGGACACCTACATCGGTGACTTGATCACACCCGATGGCTACATGCCATGGCAAACATTGGAGGGTTTATCTGGAATGGACACTTGCTTTTACGCCGAGTACAACAACCGTGGCCCTGGTGCAGACAGATCCAAGCGCGTCAAATGGCAGGGAGTAAAGACCCTCACATCAGAAGGAATAACAAATTTCTTGCCATCCATGTTCTTCCACGGAGATGACTGGATCAGGGTAACCAGGGTTCCTTACTATTCTGGAGTGTCCTCCATTAGGACCCCCACTCATTGA 1770 0.4983 MGADGQSRRIAIIGVSTFLLVAMVVAVTVSVNISNKETSGNEKEESKTRVASTMKAVKTLCAPTDYKEDCEESLTAHAGNTTDPRELIKIAFNVTIGRISDGLQKTQFMHEAENDPRTKEALDACKQLMNLSMGELRRSLEKFNKFDLNNLDAILTSLKVWLSGAITYQETCLDAFENTTTDASHKMQDLLQAAMHMSSNGLAIITELSKTLSEMHVTKPGRRLLKDVDDLSVLGHEDDELFELPEWVEDRAGVRRLLHMTGRKHMANVVVAKDGSGNFTTINEALQHVPTKNVRPFVIYIKEGVYNEYVEVYKNMTHVVFIGDGGKKSRITGNKNFIDGVGTYRTASAAISGDFFVAIGMGFENSAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKEKHQPSGLVIQGGAIVSDPKYYPVRFDNKAYLARPWKNYSRTIFMDTYIGDLITPDGYMPWQTLEGLSGMDTCFYAEYNNRGPGADRSKRVKWQGVKTLTSEGITNFLPSMFFHGDDWIRVTRVPYYSGVSSIRTPTH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02906 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 208 IPR006501 GO:0004857
Cca03g02906 589 PANTHER PECTINESTERASE 10 583 - -
Cca03g02906 589 Gene3D - 263 581 IPR012334 -
Cca03g02906 589 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Cca03g02906 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 210 IPR035513 -
Cca03g02906 589 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Cca03g02906 589 CDD PMEI-like_3 59 210 - -
Cca03g02906 589 SMART PMEI_2 52 204 IPR006501 GO:0004857
Cca03g02906 589 SUPERFAMILY Pectin lyase-like 267 580 IPR011050 -
Cca03g02906 589 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Cca03g02906 589 Pfam Pectinesterase 268 567 IPR000070 GO:0030599|GO:0042545
Cca03g02906 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Cca03g02906 589 PANTHER PECTINESTERASE 10 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02906 Cca-Chr3 50394109 50396855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02906 8 581 Carbohydrate Esterase AT3G05610 49.568 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02906 K01051 - gmx:100801686 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02906 03 50394109 50396855 Cca02g01449 02 33071639 33074434 PCT