Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02905 ATGGCCATTTCCGAGCTTTCCTTGAGCTTCTTCATATTCTATAATTCTCTAAGCATTAGTTTCTCCAACTACGCGTCTCTTGCTGCACCCTCCAGCGATTCCATTTGCAACCTCACACCTTATCCAACATTTTGCGAATCCAATTCACCTTCTACCGGCCAACCCAACATACATGGATATGGCCGTTTTTTCGCAGACAACTCATTGTCATCATCAAAGAAGTTCGTCTCATTAGTCTCTAAATACCTAAAAAAATCTCCATCATCCAAGTTCCCAAACTCCACCATGCTCGCCCTTGAAGATTGCTACCTTCTAGGTAACCTGAACATGGGCTTTTGGAAAAGGACACAAAAAAGCATCAACAACACTAACACCCTCAGCAACTCAGAGGCTGAAAATTTGCACACTTTGCTCAGTGCTACGTTGACCAACTACGACACGTGTTTAAACAGCATTCATGAAACCACGTCGAGCCCCGACGATGAACTACTAACCCATCTTTCCAATGGAACCATGTTTTATAGCATATCTCTTGCGTTCTTCAAGAGGGGATGGGTAGCCAATGATGCAGAAAGAAATGGTCACGTGTGGGAACAGATGGTGTACGAGGTTGTCAGAACAAGGGGAAGAAAACTGCTTCAGTTGGGTCCGGACAACGTTGTTGTGAGGCAAAGGGTGGTGGTGAACCCAGATGGGTCTGGAAACTTCACAACTATCAATGATGCTGTGGCTGCTGCACCGAACAACACGGGGAGTAGCGACGGGTTTTTCGTGATTCAGGTGGTGGCTGGTGTGTATGAAGAGTATGTTTCTATTCCCAAAAACAAGCAGTATTTGATGATGATAGGAGATGGAATTAACCAGACCATAATCACCGGCAATCGCAGCGTCCTTGATGGTTGGACTACCTTCAATTCTGCTACTTTTGCGGTGGTTGCTGAAGGTTTTGTGGCAATAAACATAACATTTCGCAACACAGCTGGAGCAATAAAACATCAAGCAGTAGCCCTCCGAAGCGGTGCAGACCTCTCTGCATTTTACAATTGTAGCTTTGAAGGGTACCAAGACACCTTATACACACATTCCCTTAGACAATTTTATAGGAACTGTGACATTTATGGCACAGTGGACTTCATATTTGGTAACGCAGCGGTAGTCTTGCAAGACTGTAACATACACCCAAGACTTCCTCTGCAAAATCAATTCAATGCCATCACTGCACAGGGAAGAACTGACATTAACCAAAACACTGGCACCTCCATTCACAATTGTAGCATAACCGCGGCAAGTGACTTGGCCACTAGTAATGGCACCACAAAAACTTACCTAGGAAGACCCTGGAAGCAATTTTCACGAACAGTTTATATGCAATCTTTTATGGACAGTTTGATCGATCCAGCGGGTTGGGTGGCTTGGTCAGGGGACTTTGCTTTGGACACCCTTTACTACGCGGAATTTGATAATAGTGGGCCTGGATCCAACACTACTGATAGGGTTACTTGGCCCGGCTACCATCTGATTAATGCCACAGATGCTGTTAATTTCACTGTTGCTAATTTCATACTAGGTGCTGCTTGGCTTCCTGCCACTGGAGTACCTTTCCTTCCTCATTTACTTTGA 1620 0.4488 MAISELSLSFFIFYNSLSISFSNYASLAAPSSDSICNLTPYPTFCESNSPSTGQPNIHGYGRFFADNSLSSSKKFVSLVSKYLKKSPSSKFPNSTMLALEDCYLLGNLNMGFWKRTQKSINNTNTLSNSEAENLHTLLSATLTNYDTCLNSIHETTSSPDDELLTHLSNGTMFYSISLAFFKRGWVANDAERNGHVWEQMVYEVVRTRGRKLLQLGPDNVVVRQRVVVNPDGSGNFTTINDAVAAAPNNTGSSDGFFVIQVVAGVYEEYVSIPKNKQYLMMIGDGINQTIITGNRSVLDGWTTFNSATFAVVAEGFVAINITFRNTAGAIKHQAVALRSGADLSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQDCNIHPRLPLQNQFNAITAQGRTDINQNTGTSIHNCSITAASDLATSNGTTKTYLGRPWKQFSRTVYMQSFMDSLIDPAGWVAWSGDFALDTLYYAEFDNSGPGSNTTDRVTWPGYHLINATDAVNFTVANFILGAAWLPATGVPFLPHLL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02905 539 Pfam Pectinesterase 226 523 IPR000070 GO:0030599|GO:0042545
Cca03g02905 539 PANTHER PECTINESTERASE 20 534 - -
Cca03g02905 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 183 IPR035513 -
Cca03g02905 539 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Cca03g02905 539 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Cca03g02905 539 PANTHER PECTINESTERASE 20 534 - -
Cca03g02905 539 SUPERFAMILY Pectin lyase-like 223 536 IPR011050 -
Cca03g02905 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 183 IPR035513 -
Cca03g02905 539 SMART PMEI_2 27 180 IPR006501 GO:0004857
Cca03g02905 539 CDD PMEI-like_3 34 185 - -
Cca03g02905 539 Gene3D - 219 538 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02905 Cca-Chr3 50388015 50392208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02905 6 539 Carbohydrate Esterase AT4G02330 53.497 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02905 K01051 - gmx:100801141 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02905 03 50388015 50392208 Cca03g02905 03 50388015 50392208 ECH
Cca03g02905 03 50388015 50392208 Cca02g01448 02 33068436 33070649 PCT