Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02904 ATGGCCACCCTTAGTTTCCTTTTCATCCTCATGCTTTTACCCTCATTTGAGGCTCTCTCAGATGAATCCACACCCTACTCATCAGAAATCCAAACACAAGACATGCAAGCCCTGATTGCACAAGCATGCATGGACATCGAAAACCAAAACTCGTGCCTCACAAACATCCAAAACGAGCTCACCAAAATAGGTCCTCCAAGCCCCACCTCAGTGATGAGTGCAGCACTCAAGGCCACACTGAACGAAGCAAGAGTGGCCATCGACAACATAACAAGGATCACCGAATTCTCCGTCAGTTACCGCGAGCAACAAGCCATAGAAGATTGCAAGGAGCTCTTGGACTTCTCGGTCTCCGAGCTTGCATGGTCGATGGGTGAGATGAGAAGACTTAGATCAGGAGACACAAATGTTCAACACGAGGGAAACCTCGAAGCGTGGCTAAGTGCAGCACTCAGCAATCAAGACACGTGCCTAGAAGGCTTTGAAGGCACTGATAGACGCCTCGAGAGTTACGTGAGTGGAAGCTTGACACAAGTGACGCAACTTATAAGCAATGTTTTGTCTTTGTACACTCAGTTGCATGGCTTACCGTTTAGGCCTCCGAGGAACACTACAAGTGAAACAATGGAGTTTCCTGAATGGATGAGTGAGGGTGATCAAGAGCTGCTTAAGGCCAAGCCACGTGGCGTGCGTGCGGACGCGGTTGTGGCGTTGGATGGGAGTGGTCACTACCGCTCTATCAACGATGCTGTTAATGCAGCTCCGAGTCATAGTCAAAGGAGGTATATTATTTACGTAAAAAAGGGACTCTACAAGGAGAATGTGGACATGAAGAAGAAGATGACAAACATCATGCTTGTGGGGGATGGTATTGGCCAAACCATTATCACAAGCAACCGGAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACGCTTGCTGTATCGGGGAAGGGTTTCATTGCGAGGGACATGTCATTCAGGAACACAGCTGGGCCAGTGAATCATCAAGCGGTGGCACTGCGTGTGGATTCAGACCAATCAGCGTTCTACAGGTGCAGTGTGGAAGGGCACCAAGACACCCTCTACGCGCACTCCCTGCGACAGTTCTACCGCGAATGCGAAATCTACGGCACCATTGACTTCATTTTCGGCAACGGGGCCGCAGTGTTGCAAAATTGCAAAATATACACCAGGGTCCCACTTCCCTTGCAGAAGGTCACCATCACGGCCCAAGGCAGAAAAAGCCCACACCAGAGCACTGGCTTCACCATCCAGGATAGCTACGTTCTTGCCACCCAGCCCACGTACTTGGGCCGGCCCTGGAAGCAATACTCCAGGACGGTCTACATCAACACATACATGAGTGGGCTGGTCCAGCCTCGAGGGTGGCTCGAGTGGCTGGGAAACTTTGCCTTGGACACCTTGTGGTACGGTGAGTATAGAAACTATGGGCCTGGTGCATCAGTGGCGGGCCGGGTCAGATGGCCCGGTTATCATGTGATTAAAGATGCTTCTACAGCTAGTTTCTTCACAGTGCAGCGCTTCATTAATGGGGACACGTGGCTGCCCAAGACAGGTGTTAAATTTACAGCAGGCTTGACCAATTGA 1614 0.5062 MATLSFLFILMLLPSFEALSDESTPYSSEIQTQDMQALIAQACMDIENQNSCLTNIQNELTKIGPPSPTSVMSAALKATLNEARVAIDNITRITEFSVSYREQQAIEDCKELLDFSVSELAWSMGEMRRLRSGDTNVQHEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYVSGSLTQVTQLISNVLSLYTQLHGLPFRPPRNTTSETMEFPEWMSEGDQELLKAKPRGVRADAVVALDGSGHYRSINDAVNAAPSHSQRRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWLGNFALDTLWYGEYRNYGPGASVAGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPKTGVKFTAGLTN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02904 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 194 IPR006501 GO:0004857
Cca03g02904 537 SMART PMEI_2 34 189 IPR006501 GO:0004857
Cca03g02904 537 CDD PMEI-like_3 51 195 - -
Cca03g02904 537 Gene3D - 228 535 IPR012334 -
Cca03g02904 537 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 6 535 - -
Cca03g02904 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 194 IPR035513 -
Cca03g02904 537 SUPERFAMILY Pectin lyase-like 230 534 IPR011050 -
Cca03g02904 537 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Cca03g02904 537 Pfam Plant invertase/pectin methylesterase inhibitor 38 189 IPR006501 GO:0004857
Cca03g02904 537 Pfam Pectinesterase 233 521 IPR000070 GO:0030599|GO:0042545
Cca03g02904 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 195 IPR035513 -
Cca03g02904 537 PANTHER PECTINESTERASE 6 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02904 Cca-Chr3 50383100 50385254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02904 8 537 Carbohydrate Esterase AT3G05620 64.154 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02904 K01051 - gmx:100810565 1008.82