Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02898 ATGGGGCATTTTTCCTCAATGTTCAATGGGTTGGCCCGCTCGTTTTCAATGAAGAAAGGAAGAAAGAATGGGACATGTGGAGGGAGGGAAGCTGCTGAAGCAATGGCAAAAGAAGCTAAGAAAAATGACATGATGTTGTGCAACTCTGGCAATGTTCATGTCGATGGTTCAAACAACTTTGTTTCCGTTTTCTCCAAAAGAGGCCAGAAAGGAGTGAACCAAGATTGCTGCATAGTATGGGAGGAATTTGGATGCCAAGAGGACATGATCTTCTGCGGTGTTTTTGATGGGCACGGGCCATGGGGTCACTTTGTGGCCAAAAGAGTGAGAGAGTCAATGCCACCATCTTTGTTATGTAACTGGCAGGAGACACTAGCCCAAACTTCACTTGATGATCAAGGTATTGATGTAGAGGAAGAGAAAAGGCATCAATACCGGTTCAACATATGGAAGCACTCTTACTTGAAGACTTGTGCTGCCATTGATCAAGAACTAGAGCAGTATCGCAAGATAGACTCATTTTACAGTGGAACAACTGCCCTTTCAATTGTTAGACAGGGTGAACTCATTGTCATAGCAAATGTTGGTGATTCTCGTGCCGTATTAGCTACAACATTAGATGATGGAAGTTTGGTACCGGTTCAACTAACAGTTGATTTCAAGCCAAACTTACCCCAGGAGGCAGAGAGAATAATTCAgtgccaggggcgtgtgttctgcttagaggacgagccaggggtgcatagggtgtggttaccagatgaagagtctccaggactagccatgtctagggcctttggtgaccactgcattaaagggtacggtctaatttctgttcctgaggtaacacagagaaatataagcagtagagaccagtttgttgtgctagccactgatgggGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGGCAGCAAAACGTTTGGTGGAGTGTGCGGTGCATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGACATTTCAGCTATTTGTCTCTTCTTTCACTCTTCCATTTCATCACAACAATCCAATCTACCTCATGGGATCCACAACTTACTTTTTGGCTTCTTGCGGATAACTTTCCCACCATGCAACAACATTCTCATTTTTGTTTCTCGTTTATGCTGGCAAATTGACTGTGGTGGTAATGTTTTGGCTTCTCCAACGCGACTCAAACAAATAGCAAGAAGCCAGGTGGATTACATTCTTGGAAGCAATCCAGAGAATATGTCATACATGGTTAGATACGGAGGAAAATATCCTGAAAGAATACATCATCGTGCGTCGTCATTGCCATCCGTAGATGAGTACCGTGGCCACATTGGTTGCAAAGAAGGATACTTTTATTTTCAAACCCAGAATCCAAACCCCAACTTGCTTTTAGGAACTCTTAAACACTTAGGAGGCTCTAGATTTTGGAAGAATTTGAGGTTGCGGACACTCTCTGGGTTCGGATTTCGCGTTGAGATCGGTGTTCCAAGATCGAGATTATTGGAAGAAAAGTTCAAGGAGTCTGTGCACAGGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAAGAAAAAGTACAGGCTGGTGAGTGGGATGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGACTTGAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACACAGCTGTTAACTCTTAGTAATTTCAGGGAGAATGAGCAGCTTTCTAAGTATGGTGACACCAAGACTGCTCGAGGGATCATGTTGATAGAGCTAAAAAAGCTTATAGAGGCAAATCCTCTTTTCCGTGATAAACTTATCTTTCCAACCCTTAGATCATCAAGATTGCGGACATTAATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAACCCAGATATAAAGACTTTATTCACTGACCATGCATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTGCTTATACTTCAATTGGAGCCCATGGTCCCTTTCCACCTGCCGCTGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCGGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCATCCAAGAACACCTCCGGCAACTCCAGGCATAGTTGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTGTTGAGGAGGTTTCATATCCTGCTGCTAGACAAGCCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACATTGCACCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTTGCAGTTGGTTCTAATAATGGTGAAATTACACTCTGGGAACTTGGGTCGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCACAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCCGTCAGCCGTGTCACATGGAGCCTTGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTATATACCTACACCGGATCAAATGAGCTGGCTCAGCGTGTAGAGGTGAATATTATTCTTATCAGAAGTAACCAAAGTTGTAATTACAATTTGATTCACGTTTCCTTGCTGATGCAGGTTGATGCCCATATTGGTGGTGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTTTGTATTGTAACTTGTGGAGATGATAAATTGATAAAGGTGTGGGATTTAAATGGACGAAGACTATTTAACTTTGAGGGGCATGAGGCACCTGTTTATTCTATATGTCCTCATCACAAGGAGAGCATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTGTACGATAATATGGGTTCTAGGGTTGACTATGATGCCCCAGGTCATTGGTGTACTACAATGCTCTACAGTGCTGATGGAAGTAGACTGTTTTCTTGTGGGACTAGTAAAGATGGAGAGTCTTTTCTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTACTGGTGTCGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAGGATAGCCAAATCAAATTTTGGGACATGGACAATATTAATCCCCTAACAAGCACCGATGCAGATGGTGGACTACAGGCCCTTCCACACTTGAGATTCAACAAGGAAGGAAACCTTCTTGCTGTTACTACTGCGGACAATGGATTCAAAATTCTTGGCAATGCTACTGGTCTTAGATCCCTGAGAACAGTTGAAACTCCAGGATTTGAAGCACTGAGGCCACCACCCATTGAATCTGCTGCAATCAAGGTATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCACAGTTCGAAATGTGGAGAAACCTAGAACTGCGGAAGATGGAATAGACAGGGCTAAACCATGGCAGCTGTCTGAAATTGTGGACCCTGTCCATTGTCGGTTAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTCGTTCGACTATTATATACAAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGCCTCGTAGTGAACAAAATCTCAATGGGAAGGCAACTGCCAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTCTCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCGCTTTCAAAGAATGACTCCTATGTTATGTCTGCCTGTGGTGGAAAGGTTTCGTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCTCCACCCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCTAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCAGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCACCTTTGTGTATGGAGCATCGATACATGGGAGAAAAGAAAATCAGTTCCTATACAACTACCCGCAGGAAAGGCTCCTGTTGGTGACACACGTGTGCAGTTTCATTCAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGACCGCATTCGGCAGTGGGTTCCACAAGATGTTCTGTCTGCTCCTATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTGCGATGGCAACACTGGGGTTTTTGATGCTGACAGCCTGAGACTAAGATGTCGGATTGCCCAATCCACATACTTCTCACCTACGGCTCTAAGCGGGAATCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCCCTAGAACCCAACCAATTTGCAGTTGGATTGACAGATGGGTCTGTGAAAGTGATAGAGCCCAGTGAATCAGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGTAGAACAGGATCATCATCTACAACAACCAACCACACACCCGATCAGGCACAACGATAA 4971 0.4154 MGHFSSMFNGLARSFSMKKGRKNGTCGGREAAEAMAKEAKKNDMMLCNSGNVHVDGSNNFVSVFSKRGQKGVNQDCCIVWEEFGCQEDMIFCGVFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQTSLDDQGIDVEEEKRHQYRFNIWKHSYLKTCAAIDQELEQYRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATTLDDGSLVPVQLTVDFKPNLPQEAERIIQCQGRVFCLEDEPGVHRVWLPDEESPGLAMSRAFGDHCIKGYGLISVPEVTQRNISSRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKRLVECAVHAWKRKRRGIAVDDISAICLFFHSSISSQQSNLPHGIHNLLFGFLRITFPPCNNILIFVSRLCWQIDCGGNVLASPTRLKQIARSQVDYILGSNPENMSYMVRYGGKYPERIHHRASSLPSVDEYRGHIGCKEGYFYFQTQNPNPNLLLGTLKHLGGSRFWKNLRLRTLSGFGFRVEIGVPRSRLLEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWDEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHACTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKHPRTPPATPGIVDYQNADHEQLMKRLRPAPSVEEVSYPAARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLAVGSNNGEITLWELGSRDRLVSKPFKIWDITACSLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYTYTGSNELAQRVEVNIILIRSNQSCNYNLIHVSLLMQVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRRLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNRFLAAGEDSQIKFWDMDNINPLTSTDADGGLQALPHLRFNKEGNLLAVTTADNGFKILGNATGLRSLRTVETPGFEALRPPPIESAAIKVSGSSAVNVSPVNCKVERSSPVRPSPILNGVDPTVRNVEKPRTAEDGIDRAKPWQLSEIVDPVHCRLVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWPRSEQNLNGKATASVVPQHWQPNSGLLMTNDVSGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAHLCVWSIDTWEKRKSVPIQLPAGKAPVGDTRVQFHSDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLSAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIAQSTYFSPTALSGNQSVYPVVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRTGSSSTTTNHTPDQAQR 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02898 1656 CDD PP2Cc 59 354 IPR001932 -
Cca03g02898 1656 ProSiteProfiles Trp-Asp (WD) repeats profile. 974 1010 IPR001680 GO:0005515
Cca03g02898 1656 SUPERFAMILY PP2C-like 53 355 IPR036457 -
Cca03g02898 1656 ProSiteProfiles Trp-Asp (WD) repeats profile. 842 885 IPR001680 GO:0005515
Cca03g02898 1656 Gene3D - 1355 1628 IPR015943 GO:0005515
Cca03g02898 1656 ProSitePatterns Trp-Asp (WD) repeats signature. 995 1009 IPR019775 -
Cca03g02898 1656 SUPERFAMILY WD40 repeat-like 1297 1617 IPR036322 GO:0005515
Cca03g02898 1656 SMART PP2C_4 51 352 IPR001932 -
Cca03g02898 1656 PANTHER PROTEIN, PUTATIVE-RELATED 517 1656 - -
Cca03g02898 1656 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 535 593 IPR006595 -
Cca03g02898 1656 MobiDBLite consensus disorder prediction 1619 1656 - -
Cca03g02898 1656 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 839 1475 IPR011047 -
Cca03g02898 1656 Pfam Protein phosphatase 2C 75 332 IPR001932 -
Cca03g02898 1656 SMART WD40_4 1431 1470 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1576 1617 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1349 1385 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1054 1097 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 967 1008 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1526 1562 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 836 876 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1388 1428 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1010 1051 IPR001680 GO:0005515
Cca03g02898 1656 SMART WD40_4 1100 1140 IPR001680 GO:0005515
Cca03g02898 1656 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1438 1473 - -
Cca03g02898 1656 ProSiteProfiles Trp-Asp (WD) repeats profile. 1118 1149 IPR001680 GO:0005515
Cca03g02898 1656 Gene3D - 50 357 IPR036457 -
Cca03g02898 1656 Pfam WD domain, G-beta repeat 972 1008 IPR001680 GO:0005515
Cca03g02898 1656 Pfam WD domain, G-beta repeat 1437 1470 IPR001680 GO:0005515
Cca03g02898 1656 ProSiteProfiles Trp-Asp (WD) repeats profile. 1438 1479 IPR001680 GO:0005515
Cca03g02898 1656 SUPERFAMILY Six-hairpin glycosidases 408 484 IPR008928 GO:0005975
Cca03g02898 1656 Gene3D - 828 964 IPR015943 GO:0005515
Cca03g02898 1656 Gene3D - 965 1190 IPR015943 GO:0005515
Cca03g02898 1656 ProSiteProfiles PPM-type phosphatase domain profile. 60 354 IPR001932 -
Cca03g02898 1656 Gene3D - 388 491 IPR012341 GO:0005975
Cca03g02898 1656 MobiDBLite consensus disorder prediction 1633 1656 - -
Cca03g02898 1656 Pfam Glycosyl hydrolase family 9 406 484 IPR001701 GO:0004553|GO:0005975
Cca03g02898 1656 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 517 1656 IPR027728 GO:0006355
Cca03g02898 1656 SMART ctlh 535 593 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02898 Cca-Chr3 50309755 50332169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02898 1 355 PP2C-type Phosphatase Gene Family AT3G05640 71.989 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02898 - - gmx:100808421 2050.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02898 03 50309755 50332169 Cca02g01442 02 32991514 32993370 PCT