Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02896 ATGGAAGCTGAACAAGTTTTAACATTCTCTCTTGCTTCTGTGATCGAAGATGTTCTTCAACAACATAGTGGTCGGTTGGGCGTTAATTTGGCATCAAGAAAAACTGAAGAAGATTCCTTAAGAAGGTATGAAGCAGCACGTTGGCTGCGAAAGACAGTTGGAGTTGTTAGAGGGAAAGACTTGCCAGCTGAGCCTTCTGAAGAAGATTTCAGAATTGGATTACGTAGTGGGATTATCCTTTGTACTGTTCTTAACAAAGTTCAACCTAGAGCAGTGCCCAAGGTAATTGAAGGCCCGTGTGATTCTGTTATTATTCCTGATGGAGCAGCATTGTCTACGTATGAATATTTTGAAAATGTAAGGAGTTTTCTAAAGGTTGTAGAGGAAATGGGGATTCCTACTTTTGAAGCTTTTGATTTGGAACAGGGAGGAAAGTCTTCTAGGATAGTGAATTGTGTTTTAGCGCTCAAGTCTTATGCGGAATGGAAATTCGGAGGAGGAATTGGGTCGTGGAAATATAGTGGGGTTGCTAATGCAAAGCCTCCTATCTCTGGGAAACCACTTTTGAGGGAGAACTCAGAACCATTGATGAAGCCTTTGAGGACTGTGTCATCAGGGGACATAGATGGTTATATGAGTGATCCCGGACTCGATCGAAATGAAAAGGGTCCCTTTTCTTCCTTAAATTCACTTGTTTGTGAATATTTGGCCGACAAGAAGCCAGAAGAAGTTCCCATTGCAGTGGAATCCCTGCTTAGCAAAGTCATCGAGGAATTTAAACATCACACCCGAATTCAACATGAAATGTGTAAAACAACCCAGGAAGATAAGACGACATTTGAAACAGAATGTTCAAATTCAAAAGTTGCTTCTGAAACAGATTGTTCATTTTCAGAAGATGTTTTTATTAATGAAAGGATGGAAGAAAAGGAGGATGACCAAGACGTACAAGATAAACAAGAGGAAAGTTATGAAGAAAAGTATAATCAATTTGAACTTGAAGACTCAAGTAGACAAAATTTGATTTTGAAACAGCAAAATAATCAATTTGAACTTGAAGACTCAAGTAGACAAAATTTGATTTTGAAACAGCAAAATATAGTCGAACAACAAAATAGAATCACCTCGGAATTGAAAAACATCGTCCATCAAACAAAGTTAGGAATGCAATCCATGCAAAATGAACATCGAAAGGAGATCATTTATCTAAGTAAGCATATGCATAGCCTAGCTTCAGCTGCTTCGGGATATCAAAAAGTTCTTGAAGAAAACCGTAAGCTGTACAATCAAGTGCAAGATTTGAAAGGAAATATTAGGGTGTACTGTAGAGTTCGACCCTTCTTGGGTGGTCAACCAAGCCACTATAGCTCTGTCAGTAACGTGGAAGAGGGAAGTATTTCAATCATAACACCTTCCAAATACGGCAAAGAAGGGAAAAAGACATTTAATTTCAATAGAGCCTTTGGTCCTTCTGCAACCCAAGGGGAGGTCTTCTCAGACACGCAACCTCTAATTCGTTCTGTTTTGGATGGTTACAATGTTTGTATATTTGCCTATGGCCAAACGGGATCAGGAAAAACATTCACTATGTCTGGACCAGATGACCTTAACGAGGAAACCATAGGTGTCAACTATCGTGCACTGGAAGATCTATTCTATCTCTCAGAGCTGAGGAAAGACACCATTGCTTATGAAATTTCTGTTCAGATGCTTGAGATTTACAATGAGCAAGTTAGGGATCTACTAACAACAGATGATATTCGTAACAGTTCCCATAATGGCATCAATGTGCCGGATGCCAACCTTGTTCCAGTTTCATGCACTTCTGATGTCATTAATTTAATGAACTTGGGGCATAAGAACCGAGCTGTTGGTTCTACTGCCATGAATGATCGTAGTAGTCGCTCTCACAGTTGTCTAACTGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTGGTTGACCTGGCAGGAAGTGAAAGAGCTGATAAGACTGAGGCCACGGGTGATAGACTTAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTGGGAGATGTCATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCTTACAGGAATAGCAAACTTACTCAACTACTTCAGGATTCTCTGGGAGGGCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCAGAGCCTGAAGCTCTTGGAGAAACACTTAGCACTCTAAAGTTTGCTGAACGAGTCTCTACCGTTGAACTTGGAGCCGCACGCGTTAATAAAGATAATTCGGATGTGAAAGAGCTTAAAGAGCAGATTGCTAGTTTGAAGGCAGCTTTAGCAAGAAAGGAGGGAGAAGCTGAAAATTCTCAACAATCTATCAATAGTAGTAGCAATGAAATACCCAAGTTGAAATCATATGCATCCTCTCCTATACAACGTAGTTGGACATCTGGACCTCGTAAGTTGCCAAAAGATGATTCCAGTAGCCCGGAGGGTCTGAAAAACACCGCATCAACCTTGAAGAGACGAAGCCTAGATCTCCATGACATGCGCAGGGATTCATCTCCGTGGCCAAATGTTAGTAGAGGTCTTGGAAAGGAAGATGACAAAGAATCAATTTCTGGGGATTCGGTTGATAAGATTTTCATGAACAGGAATGACAGCATGACTAGTGAAGATGGTCTCATGGGGCCATGGGAAGCAGAAAGCAAACAATCTTCTCCAATGTTAAGTCCCACTTATCTCACAGAGCCTTCTAAAATATGCATGGACCAACAACCTTTGCATAAAAAGGATAACAAAGACGATGAAGATTTACCTAAGCAAGGGCTTGATACGGCCACCACAGAGGAATTGGATGGGAACGAGACTGAAACTAGTGAATCTTCAGAACTGGACTTGCATTGGCCATCACATATACCTAAACCAATCATCGGTTCAAGCGGATTAGGCATTAGAGCAAAGAAATCATCAAATATAAGACCATCACTAAAGAACCCGCCAGAAGTCAGGAGTATGATCCCATCATTTATTCCTGTGCCAACACCAAAAAAACCCACCCCAATTACTCAAGCAAGAAAGCCTCCAGGCTCTAATGATATAAGGAGAAGGATTACCAAAGTCACGGAGCAACGCTCTCTTATTCTCCGTCACTGCCACTCTCAGTCTCACTGTCTCTTCTCCTCTCTAGGGTTTATCGCCATTCGATCTCAACCTCTCTTCTTCCAAAAATGCCGATTCCACAGTCTCACCGATAGTGCGCCTGCTTTTGCCGATGCGCAATGTAGGATGAGTAGGATTGAATTATCGAGGACGCAGCCAGCGCCGGTTCCATTGGCGACTCTGATTGGCCGCGAGCTTCGAAATGGAAAAGTTGAAAAACCTTTCGTGAAGTATGGACAGGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCTGGGGATGCATCCACGGCTTTTTCTGTCTTCGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTATTTTTGCGAAGGAAAATTTGCTAAGTAATGTTTTGAGTGCAATACCACAAGATATTAACAGGGATGCATGGCTTCAGGCCCTTCCTCGGGCCCTGGTTGTTGGTTTTGTGAAGACTGACATAGAGTTTCAGCAAAAAGGGGAAACTTCCGGAACAACAGCTACATTTGTTTTGGTTGATGGATGGACTATCACTGTTGCATCTGTTGGGGATTCCCGCTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTGTTGACAGTTGATCATCGACTGGAAGAGAATGCAGAAGAGAGGGAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGGTTGGGCCTCTTCGCTGCTGGCCTGGTGGGTTGTGCCTATCTAGATCAATAGGTGACACTGACGTGGGAGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGACTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCATCTGATATGGCTGCCAAGTCATGTCGGGGTCTACCTGCAGAGCTTGCTGCAAAACTAGTGGTTAAGGAGGCTCTAAGGTCAAGGGGCCTCAAGGATGATACAACTTGCCTTGTTGTAGATATTATTCCTTCGGACCTACCTGTATTACCATCAATTCCGAGAAAGAAATATAATATGCTAACTTCGCTTCTATTTTTTGGAAAGAAATCTGAAAACTCAGTGAACAAAGCTACCAATAAGCTTTCTGCAGTTGGTGTTGTGGAGGAGTTGTTTGAAGAGGGTTCTGCAATGCTTACAGAAAGGCTAGGTAAGGATTTTCCGCTTAATAAGAATTCTGGTATTTTCCGCTGTGCGGTTTGCCAAGTGGATCAACCCCCTGGTGATGGTTTATCAGTGAACTCTGGGCCTTTTTTCTCCCCAGCGTCAAATCCATGGGAAGGCCCATTCCTCTGCACAAACTGTCGGAAGAAGAAAGACGCCATGGAAGGAAAAAGACCTAGCAGACCCACC 4584 0.425 MEAEQVLTFSLASVIEDVLQQHSGRLGVNLASRKTEEDSLRRYEAARWLRKTVGVVRGKDLPAEPSEEDFRIGLRSGIILCTVLNKVQPRAVPKVIEGPCDSVIIPDGAALSTYEYFENVRSFLKVVEEMGIPTFEAFDLEQGGKSSRIVNCVLALKSYAEWKFGGGIGSWKYSGVANAKPPISGKPLLRENSEPLMKPLRTVSSGDIDGYMSDPGLDRNEKGPFSSLNSLVCEYLADKKPEEVPIAVESLLSKVIEEFKHHTRIQHEMCKTTQEDKTTFETECSNSKVASETDCSFSEDVFINERMEEKEDDQDVQDKQEESYEEKYNQFELEDSSRQNLILKQQNNQFELEDSSRQNLILKQQNIVEQQNRITSELKNIVHQTKLGMQSMQNEHRKEIIYLSKHMHSLASAASGYQKVLEENRKLYNQVQDLKGNIRVYCRVRPFLGGQPSHYSSVSNVEEGSISIITPSKYGKEGKKTFNFNRAFGPSATQGEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDDLNEETIGVNYRALEDLFYLSELRKDTIAYEISVQMLEIYNEQVRDLLTTDDIRNSSHNGINVPDANLVPVSCTSDVINLMNLGHKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGSTIRGSMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVISSLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNSDVKELKEQIASLKAALARKEGEAENSQQSINSSSNEIPKLKSYASSPIQRSWTSGPRKLPKDDSSSPEGLKNTASTLKRRSLDLHDMRRDSSPWPNVSRGLGKEDDKESISGDSVDKIFMNRNDSMTSEDGLMGPWEAESKQSSPMLSPTYLTEPSKICMDQQPLHKKDNKDDEDLPKQGLDTATTEELDGNETETSESSELDLHWPSHIPKPIIGSSGLGIRAKKSSNIRPSLKNPPEVRSMIPSFIPVPTPKKPTPITQARKPPGSNDIRRRITKVTEQRSLILRHCHSQSHCLFSSLGFIAIRSQPLFFQKCRFHSLTDSAPAFADAQCRMSRIELSRTQPAPVPLATLIGRELRNGKVEKPFVKYGQAGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAIFDGHNGISAAIFAKENLLSNVLSAIPQDINRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPSIPRKKYNMLTSLLFFGKKSENSVNKATNKLSAVGVVEELFEEGSAMLTERLGKDFPLNKNSGIFRCAVCQVDQPPGDGLSVNSGPFFSPASNPWEGPFLCTNCRKKKDAMEGKRPSRPT 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02896 1528 CDD KISc_C_terminal 435 759 - -
Cca03g02896 1528 ProSiteProfiles Calponin homology (CH) domain profile. 39 161 IPR001715 GO:0005515
Cca03g02896 1528 SMART kinesin_4 435 765 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 Coils Coil 417 437 - -
Cca03g02896 1528 Pfam Protein phosphatase 2C 1165 1381 IPR001932 -
Cca03g02896 1528 Coils Coil 764 805 - -
Cca03g02896 1528 PRINTS Kinesin heavy chain signature 627 644 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 PRINTS Kinesin heavy chain signature 658 676 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 PRINTS Kinesin heavy chain signature 707 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 PRINTS Kinesin heavy chain signature 511 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 ProSiteProfiles Kinesin motor domain profile. 437 757 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 SUPERFAMILY PP2C-like 1140 1399 IPR036457 -
Cca03g02896 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 791 IPR027417 -
Cca03g02896 1528 SMART PP2C_4 1125 1397 IPR001932 -
Cca03g02896 1528 CDD PP2Cc 1145 1399 IPR001932 -
Cca03g02896 1528 MobiDBLite consensus disorder prediction 789 921 - -
Cca03g02896 1528 MobiDBLite consensus disorder prediction 934 1039 - -
Cca03g02896 1528 Gene3D - 31 162 IPR036872 -
Cca03g02896 1528 Coils Coil 307 327 - -
Cca03g02896 1528 Gene3D Kinesin motor domain 432 800 IPR036961 -
Cca03g02896 1528 SUPERFAMILY Calponin-homology domain, CH-domain 40 173 IPR036872 -
Cca03g02896 1528 MobiDBLite consensus disorder prediction 791 822 - -
Cca03g02896 1528 MobiDBLite consensus disorder prediction 934 950 - -
Cca03g02896 1528 ProSitePatterns Kinesin motor domain signature. 657 668 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca03g02896 1528 Pfam Calponin homology (CH) domain 41 161 IPR001715 GO:0005515
Cca03g02896 1528 ProSiteProfiles PPM-type phosphatase domain profile. 1127 1399 IPR001932 -
Cca03g02896 1528 SMART ch_5 41 159 IPR001715 GO:0005515
Cca03g02896 1528 MobiDBLite consensus disorder prediction 847 861 - -
Cca03g02896 1528 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 1028 - -
Cca03g02896 1528 Coils Coil 333 353 - -
Cca03g02896 1528 MobiDBLite consensus disorder prediction 307 327 - -
Cca03g02896 1528 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 1028 - -
Cca03g02896 1528 Pfam Kinesin motor domain 443 756 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca03g02896 1528 Gene3D - 1136 1403 IPR036457 -
Cca03g02896 1528 SMART PP2C_SIG_2 1152 1399 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02896 Cca-Chr3 50279142 50289992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02896 1103 1526 PP2C-type Phosphatase Gene Family AT1G09160 78.066 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02896 K10406 - gmx:100799535 1526.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02896 03 50279142 50289992 Cca03g02896 03 50279142 50289992 ECH
Cca02g01254 02 30491671 30499054 Cca03g02896 03 50279142 50289992 ECH