Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02894 ATGTCGTATCGTCCTTCCGCAAGCGCCAGAACCGAGGTTCGTCGGAACCGGTACAAGGTCGCCGTGGACGCCGATGAAGGTCGCCGTCGGCGAGAGGACACCATGGTGGAGATCCGAAAGAACCGTAGGGAAGAGAGCTTGCAGAAGAAGAGACGCGAGGGTCTGCAATCTCAGTCCATGTCTGCATCAGTTCACTCTACTGTAATAGAGAAGAAGTTGGAACTCCTGCCAGCCATGGTTGCAAGTGTGTGGTCTGATGACGGTAGCAAGCAGTTTGAGGCCACAACCCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCTTTGTTGAGTTCTTGATGAGGGAAGATTTTCCTCAGCTGCAGTTTGAGGCAGCTTGGGCATTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGGTAATTGATCACGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCTCCCAGTGAAGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAACGTTGCTGGAGATTCACCCAGATGCCGTGATCTTGTTCTCGGTCATGGAGCCTTGCTTCCTCTGTTGACACAATTGAATGAGCATGCCAAGCTTTCTATGCTGAGAAATGCTACTTGGACACTATCAAATTTCTGCAGGGGAAAGCCTCAGCCTCATTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCAGTCTTATCCATTCAAATGATGAGGAAGTATTGACTGATTCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGGTGTAATTGACGCTGGTGTTTGTACCCGGCTTATTGAGCTTCTAATGCACCCATCCCCTTCAGTACTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACTGGAGATGATGTGCAGACACAGGTCATCATCAACCATCAAGCTCTTCCTCGTCTTCAGAATCTCTTGACTAATAATTATAAAAAAAGCATAAAGAAGGAAGCATGCTGGACCATATCAAACATCACGGCTGGGAATAAGCAGCAGATTCAGGATGTAATTGAGGCCAACATAATTCCTCCTTTAGTCCACTTGCTTCAAAATGCTGAGTTTGATATAAAAAAAGAGGCTGCTTGGGCTATCTCAAATGCTACTTCGGGTGGATCTAATGAACAATTGAAGTACCTGGTATGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTAATATGTCCTGATCCAAGGATTGTTAATGTTTGTCTGGAAGGGCTTGAAAACATCTTGAAGGTAGGAGAAACTGAGAAAAATATTAGCAATACTGATGGTGTGAATCTATATGCCCAAATGATTGATGATGCGGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACGGAGATTTATGAAAAGTCAGTGAAGATTCTTGAGACATACTGGATCGAGGAAGATGATGAGACTATGCCTCCAGGGGATGTTGCTCCTCAATCAGGGTTTAACTTTGGTGGCCCTGGAGTTCCTACTGTGCCGTCGGGAGGATTCAACTTTAATTAA 1602 0.4488 MSYRPSASARTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQSMSASVHSTVIEKKLELLPAMVASVWSDDGSKQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSEDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLTQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALASLIHSNDEEVLTDSCWALSYLSDGTNDKIQGVIDAGVCTRLIELLMHPSPSVLIPALRTVGNIVTGDDVQTQVIINHQALPRLQNLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIEANIIPPLVHLLQNAEFDIKKEAAWAISNATSGGSNEQLKYLVCQGCIKPLCDLLICPDPRIVNVCLEGLENILKVGETEKNISNTDGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKSVKILETYWIEEDDETMPPGDVAPQSGFNFGGPGVPTVPSGGFNFN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02894 533 SMART arm_5 317 358 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 275 315 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 403 443 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 234 273 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 149 189 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 360 400 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 106 147 IPR000225 GO:0005515
Cca03g02894 533 SMART arm_5 190 232 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Cca03g02894 533 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Cca03g02894 533 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Cca03g02894 533 MobiDBLite consensus disorder prediction 24 52 - -
Cca03g02894 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Cca03g02894 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Cca03g02894 533 Gene3D - 75 497 IPR011989 -
Cca03g02894 533 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Cca03g02894 533 PANTHER IMPORTIN ALPHA 2 521 - -
Cca03g02894 533 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Cca03g02894 533 Pfam Atypical Arm repeat 458 504 IPR032413 -
Cca03g02894 533 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Cca03g02894 533 Gene3D - 13 52 IPR036975 GO:0006606
Cca03g02894 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 406 IPR000225 GO:0005515
Cca03g02894 533 MobiDBLite consensus disorder prediction 24 59 - -
Cca03g02894 533 PIRSF Importin_alpha 5 532 IPR024931 GO:0005737|GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02894 Cca-Chr3 50254425 50259744 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02894 K15042 - gmx:100798125 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02894 03 50254425 50259744 Cca02g01433 02 32874911 32882436 ECH
Cca03g02894 03 50254425 50259744 Cca03g02894 03 50254425 50259744 ECH
Cca11g02726 11 54638094 54642320 Cca03g02894 03 50254425 50259744 ECH
Cca03g02894 03 50254425 50259744 Cca02g01433 02 32874911 32882436 PCT