Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02893 ATGGATCGGGGAGGAGGATCCAACGGCGGATCTTGCTACTATGCCGTCCTCGGGATTCGCAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAGACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTTCCAATCCCGCAACTGCCGGAGAAGCCAAGCGCCGCTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTTTCGGATCAGTCCAAAAGGTCAATGTACGATGCGGGGCTATACGACCCTTTGGAGGAAGAGGATCAAGTCCGTATAGTACTTTTCTTTCTTTTGATTTCTAGGTGCCGTAACCAAGCGGAGtaa 327 0.5321 MDRGGGSNGGSCYYAVLGIRRDASFSDIRTAYRRLAMRWHPDKWASNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQVRIVLFFLLISRCRNQAE 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02893 108 Pfam DnaJ domain 13 78 IPR001623 -
Cca03g02893 108 SUPERFAMILY Chaperone J-domain 12 88 IPR036869 -
Cca03g02893 108 SMART dnaj_3 11 73 IPR001623 -
Cca03g02893 108 PANTHER PUTATIVE, EXPRESSED-RELATED 9 90 - -
Cca03g02893 108 Gene3D DnaJ domain 4 96 IPR036869 -
Cca03g02893 108 PRINTS DnaJ domain signature 32 47 IPR001623 -
Cca03g02893 108 PRINTS DnaJ domain signature 53 73 IPR001623 -
Cca03g02893 108 PRINTS DnaJ domain signature 14 32 IPR001623 -
Cca03g02893 108 PANTHER PUTATIVE, EXPRESSED-RELATED 9 90 - -
Cca03g02893 108 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Cca03g02893 108 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Cca03g02893 108 CDD DnaJ 12 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02893 Cca-Chr3 50238948 50240406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02893 12 79 C2H2 Transcription Factor Family AT1G74250 44.928 3.41e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02893 - - gmx:100798656 178.718