Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02889 ATGACAATCATGGATCTCAAGCAAGAATGGGCATCTCTGCAGAGCAAGAAATGCTGCGCTGACTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCGGCTGGACCCAAGACTCTGTGCAATGCTTGTGGAATTAGGTATCGGAAGAAAAGGGCTTGTTCGAGGAAGAGAGAGGATGTTGCGAAGAAACAGAGGTGGAAGATgcctcagtatttgagattgttaggctctgataccaatatggccgagagccttagagacttatga 270 0.3815 MTIMDLKQEWASLQSKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKKRACSRKREDVAKKQRWKMPQYLRLLGSDTNMAESLRDL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02889 89 PANTHER GATA TRANSCRIPTION FACTOR 16 11 68 - -
Cca03g02889 89 ProSitePatterns GATA-type zinc finger domain. 19 44 IPR000679 GO:0006355|GO:0043565
Cca03g02889 89 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 53 - -
Cca03g02889 89 Pfam GATA zinc finger 19 52 IPR000679 GO:0006355|GO:0043565
Cca03g02889 89 SMART GATA_3 13 64 IPR000679 GO:0006355|GO:0043565
Cca03g02889 89 PANTHER OS01G0976800 PROTEIN 11 68 - -
Cca03g02889 89 Gene3D - 14 72 IPR013088 GO:0006355|GO:0008270
Cca03g02889 89 CDD ZnF_GATA 19 52 IPR000679 GO:0006355|GO:0043565
Cca03g02889 89 ProSiteProfiles GATA-type zinc finger domain profile. 13 49 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02889 Cca-Chr3 50201459 50201828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02889 16 72 C2C2-Gata Transcription Factor Family AT3G06740 62.712 3.17e-20 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca03g02889 GATA 3.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02889 - - ccaj:109796439 130.954