Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02888 ATGGAGATGGAGAAAAGACGTTCCAAGTCCAAGGGAAGCTTCCTCAGCTTGTTTGATTGGAACTCCAAATCTCGGAAGAAGCTGACTTGGAACGATCCTGAGGTTTCAAAGCAAGGGAAGGAAAATGTGGACAACTTACCAAAGTCTCGTCTCACTAGGATAAAGGTGGATGAAGTTGGAGCAAGTCCAAGTAACAATCAAAGTTGTGATTTTGACAGCACCCTCTCAACTTGTAGCGATGAAGGATGTGGGAGTAAAGCCCCTGGGTTAGTAGCGAGACTCATGGGTTTGGACTCGTTGCCAGCAGCAGCAGTCACTGAGTTCTCCTGCACTTCATTGTATGGCTCTAAATCTCACGGAGCTTCTAATTGTAATGAAGGTGCTCTTCACTCAGTGGATGACTTTCACCCTGCAGACTACATAAACACACCACTCAAGCTGGATAAGTCTTCTTTGGATGCCATGGAGTCAAGGGCACGAAAAGTGGAAAACCATCCAATGAAGAGATTCCAAAGTGAAATGTTGCCTCCAAAATCGGCTAAACCAATTCCAGTTACTCACAATAAACTGTTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAAAATGCAGCTCATGTAATGGAGGCAGCTGCTAAGATAATTGAGGCAAGCCCTCGGCCATATTTGAAGAATAGAATGGCATCAACAGGGCCCTCATCTGTTCCCTTGAGAATTCTCAATTTGAAAGAGAGATTGGAAGCTGCACAATATGCATCCGTGCCTGGAAGGCCTGTGGATATGAGCAATACCTATTCTGCAAATGGCAAGCTTAGTGAGAGGAGCAGTAATTTGTATAAATGCACTTCAGAATTCAAGGTTTCAAGAGGTTCAGAAAAAAATAGTACTTGCCATTTAGCAGGTAAAGGAAAATCAGTTTCACTTGCATCACTAGCCAAAAACAATACTCAAAGTAGAGATACATTGATTTCAAATGGTAATAGGAAATGCATGAAACAGATAGAGAAGAATGAGAAAAAGTCAAATCAGCTCTCAAGGAGCCAGAAATCAAGTTCACAACAAGCCATGCAGCAGAGACCTTGTTCAAGCCGGAATAACATTGTTCTTGGGCAGAATAACCAAAAGCAAAACAGCATGACCCTCAAAGGTAAATCAACTTCAAAAATAGATTCCAATAAGCCAACAACACGAGCTTCACCTCCAGAAACTTCCACTGGAATAAGGAAGACAAAAAACAAGAGTGCTATAATTGCCAATATTCAGCCTAAAAGGTCAAGCACTAGGGCAACTGATAACCAAAAGGAGTTTCCACGATCCAAAACACAGAATATTTCCCAGAAGAAAAAGTATATCAGCAGAGATGTTCAAGAGGCAAGAGGTCCTGATAATGCAGTAAATAATTTTGGAAATAAGTCCATTAAATGCAATTTTACTACTGATGGAAGTCTTGATCAAGATGCATTTAACATGAAAGAAAGCAAGGATGTTATATCATTTACATTTACATCTCCCTTGAGGAGAAGCATGGCTGATTCACCATCCTCTACTGAGCAAGTGATGGGAACCAGAAATAGGATGGATGTCAACTCTCTTGGGCATAATGATAATCTTAATCCCAAAAAATTATCACTATCTCTGCCAGGGCCACATATGATAGATAGTGATGCTTTAAGTGTCCTGTTGGACAAAAAGCTGCAAGAATTGACATCTAGAATTAACTTACCTCAATGTACCCTGGCCACAGAGGGGTCTTCTTCTGGTTTGGGATCTAGAGTGCAAGACAAAGTTCCCAGTATGGCAAGCACCATGCCTAAGGAACAAGAGAAAAGCTTTTGCCCTGACCTGTTTAGTGATAAACTGGATAGCATGCAACTGCAGACATCAGAAGCAAGGGAAGATCATAGCTGTAGCAGCAACAGTGAAAGTGGAAATGATCTAGTTTGTTGGGATTCCACTGCTGTTGCAGGTTATGAAACTCCTTTTGTCAGTGAAAGTTACTTGGATAGTGAAGACAGTGCTTATGGCAGCACAGTTTATTCTTCCATGCAAGATGAGGAAGTATCTAATCTTTCGCAGATAAGCGAATCTGTATCACTTGAAAATGAGGGGAAAGGGTCAGAGCAAAGCTCTTCTACATCTGGTGGCAGAAATATGACCATCAAACAAATAAGTGGAATATCAAATTTAGTTGATTTTAAAAGATCAAGTAACTCTGAATTTGAATATGTGCAAGATATTCTTGGCAATGCAGAGTTTATGGCAGAAGAGTTTGTTGTGGGTCAAACTAGTACAGTCATAATGCCAAATCTCTTTGATCTGTTGGAGAATCAGAATAATGGAACAGAAAACTATGGAGAAGAGTACTGTAAGCTTGAAAGGAAGGCTATATTTGACTGTGTGAGTGAGTTCCTAGAGTTGAGATGTAAGCGGGCTTTTGTCGGAACGTGCAAAGCATGGCCTGGATGGATGATGTCAGTTCAGAGGAAGATCTGGATGGCAAATGAACTGTACAAGGAGATGCAGAGTTTTAAAAGCATGGAAGAGATAATGGTGGATGAGCTTGTCAGCAAGGACATGAGCTCTGGATGTGGGAAATGGCTTGACTTTGATGTTGAAGCATTTGAAGAGGGTTTAGAGGTTGAGGAGATGATACTAGCTTATTTGATTGATGAATTGGTTTCTGATTTGTTACTTGTTTAA 2703 0.4092 MEMEKRRSKSKGSFLSLFDWNSKSRKKLTWNDPEVSKQGKENVDNLPKSRLTRIKVDEVGASPSNNQSCDFDSTLSTCSDEGCGSKAPGLVARLMGLDSLPAAAVTEFSCTSLYGSKSHGASNCNEGALHSVDDFHPADYINTPLKLDKSSLDAMESRARKVENHPMKRFQSEMLPPKSAKPIPVTHNKLLSPIKSPGFLPPKNAAHVMEAAAKIIEASPRPYLKNRMASTGPSSVPLRILNLKERLEAAQYASVPGRPVDMSNTYSANGKLSERSSNLYKCTSEFKVSRGSEKNSTCHLAGKGKSVSLASLAKNNTQSRDTLISNGNRKCMKQIEKNEKKSNQLSRSQKSSSQQAMQQRPCSSRNNIVLGQNNQKQNSMTLKGKSTSKIDSNKPTTRASPPETSTGIRKTKNKSAIIANIQPKRSSTRATDNQKEFPRSKTQNISQKKKYISRDVQEARGPDNAVNNFGNKSIKCNFTTDGSLDQDAFNMKESKDVISFTFTSPLRRSMADSPSSTEQVMGTRNRMDVNSLGHNDNLNPKKLSLSLPGPHMIDSDALSVLLDKKLQELTSRINLPQCTLATEGSSSGLGSRVQDKVPSMASTMPKEQEKSFCPDLFSDKLDSMQLQTSEAREDHSCSSNSESGNDLVCWDSTAVAGYETPFVSESYLDSEDSAYGSTVYSSMQDEEVSNLSQISESVSLENEGKGSEQSSSTSGGRNMTIKQISGISNLVDFKRSSNSEFEYVQDILGNAEFMAEEFVVGQTSTVIMPNLFDLLENQNNGTENYGEEYCKLERKAIFDCVSEFLELRCKRAFVGTCKAWPGWMMSVQRKIWMANELYKEMQSFKSMEEIMVDELVSKDMSSGCGKWLDFDVEAFEEGLEVEEMILAYLIDELVSDLLLV 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02888 900 Pfam Domain of unknown function (DUF4378) 740 892 IPR025486 -
Cca03g02888 900 Pfam DUF761-associated sequence motif 76 104 IPR032795 -
Cca03g02888 900 MobiDBLite consensus disorder prediction 423 464 - -
Cca03g02888 900 MobiDBLite consensus disorder prediction 345 409 - -
Cca03g02888 900 MobiDBLite consensus disorder prediction 686 719 - -
Cca03g02888 900 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 900 - -
Cca03g02888 900 MobiDBLite consensus disorder prediction 337 409 - -
Cca03g02888 900 MobiDBLite consensus disorder prediction 625 644 - -
Cca03g02888 900 PANTHER DUF4378 DOMAIN PROTEIN 1 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02888 Cca-Chr3 50186765 50191608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02888 1 898 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 33.333 4.42e-113 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02888 - - gmx:102663635 1403.27