Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02886 ATGGCTAACACCAGCAACAATGTCGTTGGAGTTGACAACACATTCAGAAGAAAATTTGATCGGGAGGAGTATCTGGAACGTGCTCGGGAGCGCGAGAGACAGGAGGAGGAGGGTCGAGCTAAACCTAAAGCTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGGAAGACTCAGGTTGTTACACCGGTTGCACCACTTAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCAAACAGGTTCAGGAACGATTTGAAGTTCTAAAGAAACGAAAAGATGTTGGAAGCTTCACGGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGGGAAAAGAAAAAGGAAAAGAAGGAGAAGGCAGTGGAAGAACCTGAAATTGATCCTGATGTTGCAGCCATGATGGGGTTTGGGGGTTTCCGGTCAACCAAGAAATGA 606 0.462 MANTSNNVVGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSTKK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02886 201 MobiDBLite consensus disorder prediction 22 54 - -
Cca03g02886 201 Pfam Zinc-finger of C2H2 type 85 109 - -
Cca03g02886 201 MobiDBLite consensus disorder prediction 22 44 - -
Cca03g02886 201 SUPERFAMILY beta-beta-alpha zinc fingers 80 123 IPR036236 -
Cca03g02886 201 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Cca03g02886 201 Coils Coil 148 180 - -
Cca03g02886 201 MobiDBLite consensus disorder prediction 157 201 - -
Cca03g02886 201 Gene3D Classic Zinc Finger 79 117 - -
Cca03g02886 201 MobiDBLite consensus disorder prediction 157 183 - -
Cca03g02886 201 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 8 201 IPR040107 GO:0000398|GO:0005681
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02886 4 147 C2H2 Transcription Factor Family AT3G05760 80.556 2.84e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02886 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02886 K12848 - gmx:100527057 320.087