Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02883 ATGGTTGAACCAAGAACTATAATTCCCCTATCATCTCCCTTTTCTCCTTCCTCCGATGACAACAACTCTAATACCATTATTGGTTCCTCCTCTCACCAAAAATCACAACCTTTGAAGAAGGCACGTGGTAGGCCCCTAGGCTCCAAGAACAAACTGATACTACCCACTATGATTAACCAAGCCAACGGGAATGGCCCAAAACCTATTTACATCAATATTCCGAACAACTCTGATTTGATTGAAACAGTGGTCCAATTCGCTCGCCGCTATCAAGTTAACTTCAGTGTCGTAAGTGCATCAGGAACCATTTCCTGTGCGACTCTTCACCAAACTCATTCTCAAATTCCTACTTTCATTGCTCATGGACCTTTCACTTTAGTTTCCCTCAGTGGTACTTATATAAACAACAACCCTTTGGTTGCTACTTCATCTTTGTCATCATCCAATCTCAACCTTCGTGGCCCTTTTTCTATTTCTTTTACTTCAAGTTCAGATCAAAGCTTTGCTGGAATAGTTGCAGGGAAGGTTATGACAGCTAACAAGGTTACTGTGGTCATTTTACCTTTTCAACAACTTTAA 579 0.4093 MVEPRTIIPLSSPFSPSSDDNNSNTIIGSSSHQKSQPLKKARGRPLGSKNKLILPTMINQANGNGPKPIYINIPNNSDLIETVVQFARRYQVNFSVVSASGTISCATLHQTHSQIPTFIAHGPFTLVSLSGTYINNNPLVATSSLSSSNLNLRGPFSISFTSSSDQSFAGIVAGKVMTANKVTVVILPFQQL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02883 192 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 190 - -
Cca03g02883 192 MobiDBLite consensus disorder prediction 10 36 - -
Cca03g02883 192 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 189 - -
Cca03g02883 192 MobiDBLite consensus disorder prediction 1 46 - -
Cca03g02883 192 Gene3D - 67 192 - -
Cca03g02883 192 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 189 IPR014476 GO:0003680
Cca03g02883 192 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 190 IPR005175 -
Cca03g02883 192 ProSiteProfiles PPC domain profile profile. 63 192 IPR005175 -
Cca03g02883 192 CDD DUF296 67 189 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02883 Cca-Chr3 50155115 50155753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02883 10 189 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.670 4.29e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02883 - - gmx:100527104 158.303