Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02881 ATGGTTGAATCAGGTACTGTAATTTCCTTATCGTTAGTCTCCTATCCTTCCTCTAATGATAACAACTTTAATACTATCACTAGTTCCTCCTCTCACCAGAAATCACAACCTTTAAAGAAGTCACGTGGTAGAGTATTAGGCTCTAGGAATAAACCAATACTGCCTATCCTGATTAACCAAACCAATGGGCATGGTGTAAGACCAATTTACATCAATATTGTTCCTAACAAATCAGATATAATTAAAACAGTGGTCCAATTTGCCTATCGAGTTAGTTTCAAAGTTGTAAGTGCATCAGGAACCATTTCATGTGTAACTCTTCGCCAACCTGATTCTCAAACTCCTGCTTTCATTATTCATGGACCTTTCACTTTAGTTTCCCTCAGTGGCACCTATATAAATAACAACCCTTTTGCTGCTACTTCATCATTGTCATCATCACTAACATCAAATCTTGACTTTCTTGTCCTTTAA 474 0.3671 MVESGTVISLSLVSYPSSNDNNFNTITSSSSHQKSQPLKKSRGRVLGSRNKPILPILINQTNGHGVRPIYINIVPNKSDIIKTVVQFAYRVSFKVVSASGTISCVTLRQPDSQTPAFIIHGPFTLVSLSGTYINNNPFAATSSLSSSLTSNLDFLVL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02881 157 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 136 IPR005175 -
Cca03g02881 157 ProSiteProfiles PPC domain profile profile. 63 157 IPR005175 -
Cca03g02881 157 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 146 - -
Cca03g02881 157 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 146 IPR014476 GO:0003680
Cca03g02881 157 CDD DUF296 67 136 IPR005175 -
Cca03g02881 157 MobiDBLite consensus disorder prediction 24 44 - -
Cca03g02881 157 Gene3D - 69 151 - -
Cca03g02881 157 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02881 Cca-Chr3 50139080 50139553 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02881 39 133 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 34.000 1.40e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02881 - - var:108336502 123.635