Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02880 ATGGTGTGCGAGGAAGAGATGTTGATTGAGAAAGTGTGCGAGCTGTATGAACAAATCTCGAGTCTCGAGAGTTTGAAACCTTCCAAAAATGTCGACATGCTTTTCACCCAACTAGTCCTCACATGCATACCCCCTAGCCCAATCGATGTGACTAAACTCGACAAAACCGTTCAGGAGATTAGATCACACCTTATAAGGCTATGTGGTGAAGCTGAAGGACATTTAGAGACCCATTACTCAACCATCCTAGGCTCATACGACAACCCCCTTGACCACCTTAATATTTTCCCTTACTATTCTAACTACCTCAAACTTGGTCTTCTTGAGTTCACTATCCTAAGCCAACACTGCACCCATGTCCCTACAAAAATCGCCTTCGTGGGTTCAGGACCTCTTCCTCTTACCTCAATTGTCTTGGCCTCAAACCACTTACCCTCCACCACTTTCCACAACTATGACATGGACCCTTTGGCCAATTCCAACGCCACTCGCTTGGTTTCCTCGGATCCTGACTTGTCCAAGCGCATGGTTTTTCACACCACCGACATATTAGATGTGTCGAACGGTTTGAAGGAGTACGAGGTTGTTTATTTGGCGGCTTTGGTGGGCATGGACAAGGAGGGGAAGAACCGAATCATTGATCACTTGGCAAAGAACATGGCTCCAGGGGCACTTCTTATGCTTAGGAGTGCTCATGGGGCAAGGGCTTTTCTCTACCCTGTGGTTGAGCCTTGTGATCTTCGAGGCTTTGAGGTTCTCTCTGTGTTCCACCCCACCGATGAGGTCATCAATTCGGTTGTCATAGCACGTAAATATCCTCAACCTGTGCCTATGCACTCGCTTGATCAGCAAGGCCTTGCTTCTATGATTCTACCCAACAAGTGTTCCGAGATTCAAGCCTTCAACCCCCTCAACCATGGGAATATCATCGAGGAATTGGCCATTGAGGAGCAACTCTTGTGA 963 0.4746 MVCEEEMLIEKVCELYEQISSLESLKPSKNVDMLFTQLVLTCIPPSPIDVTKLDKTVQEIRSHLIRLCGEAEGHLETHYSTILGSYDNPLDHLNIFPYYSNYLKLGLLEFTILSQHCTHVPTKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPLANSNATRLVSSDPDLSKRMVFHTTDILDVSNGLKEYEVVYLAALVGMDKEGKNRIIDHLAKNMAPGALLMLRSAHGARAFLYPVVEPCDLRGFEVLSVFHPTDEVINSVVIARKYPQPVPMHSLDQQGLASMILPNKCSEIQAFNPLNHGNIIEELAIEEQLL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02880 320 Gene3D Vaccinia Virus protein VP39 5 273 IPR029063 -
Cca03g02880 320 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Cca03g02880 320 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Cca03g02880 320 PANTHER SYNTHASE, PUTATIVE-RELATED 1 319 - -
Cca03g02880 320 PANTHER NICOTIANAMINE SYNTHASE 3 1 319 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02880 Cca-Chr3 50127178 50128682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02880 1 316 Nicotianamine Synthase Gene Family AT5G56080 61.491 8.85e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02880 K05953 - gmx:100794250 563.918