Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02879 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGCCTTGTCCAGAAGACGTGTTTAGAGCTTCTGAAATGCGTCCAAGTTGTTACCTGCAGCTAGAAGCACCGCAACAGAATGCAACCGACTCTAATATGTCGGATCGGATGATGAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATAGAATGCCAAAAGGTTGGAGCACCACCAGAAGTTGCATCCCTTCTTGAAGAAATAGGTCGAGAAAGCCACCGCATGAATGCTCGCCGTCAGATAGGGGATGGTCCTCAACTTGATCACTTCATGGAAACATACTGCGAACTTCTTCATAGATACAAGGAGGAGTTGTCGAAGCCCTTCAGTGAAGCGACTTTGTTTTTGGGAAACATGGAATCACAACTCAGCAACCTTTGTAATGGAACACTAACAATAACAAAGTCGCCGGATAATATCCGCTCCGATGAGGTAGCAAGTGGAGCATCAGATGAAGAATTAAGTTGTGGGGAGATTGAAGCAGTTGAAGGTCATCGTGTATCTTCTTCTGTAAGTTGTCCAGGTGATCAAAAGATTAAAGAGATGCTCCTTCGCAAATATAGTGGCCATTTTAGTGGTTTGAGAAAGGAATTTCTAAAACAAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATAGCATTGATGGACTGGTGGAACACACATCATAGATGGCCATATCCTACGGAGGAGGAGAAAGTAAAGTTATCAGAAATGACTGGATTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAAAGGCATTGGAAACCAACTGAGGATATGCGATTTGCCGTTAGTGGCAGCATAGGAGGACCTGTGTTACTTTAG 888 0.4302 MEAVYRLKPLLPCPEDVFRASEMRPSCYLQLEAPQQNATDSNMSDRMMKIQIANHPLYPDLLSAYIECQKVGAPPEVASLLEEIGRESHRMNARRQIGDGPQLDHFMETYCELLHRYKEELSKPFSEATLFLGNMESQLSNLCNGTLTITKSPDNIRSDEVASGASDEELSCGEIEAVEGHRVSSSVSCPGDQKIKEMLLRKYSGHFSGLRKEFLKQRKKGKLPKDARIALMDWWNTHHRWPYPTEEEKVKLSEMTGLDQKQINNWFINQRKRHWKPTEDMRFAVSGSIGGPVLL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02879 295 SMART ELK_2 194 215 IPR005539 GO:0003677
Cca03g02879 295 Pfam ELK domain 196 215 IPR005539 GO:0003677
Cca03g02879 295 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Cca03g02879 295 Gene3D - 213 286 - -
Cca03g02879 295 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Cca03g02879 295 Pfam KNOX2 domain 96 143 IPR005541 GO:0003677|GO:0005634
Cca03g02879 295 SMART HOX_1 216 281 IPR001356 GO:0003677
Cca03g02879 295 Pfam KNOX1 domain 48 89 IPR005540 GO:0003677|GO:0005634
Cca03g02879 295 SMART KNOX1_2 46 90 IPR005540 GO:0003677|GO:0005634
Cca03g02879 295 SMART KNOX2_2 93 144 IPR005541 GO:0003677|GO:0005634
Cca03g02879 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 285 - -
Cca03g02879 295 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Cca03g02879 295 CDD homeodomain 218 277 IPR001356 GO:0003677
Cca03g02879 295 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 31 285 - -
Cca03g02879 295 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
Cca03g02879 295 SUPERFAMILY Homeodomain-like 216 288 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02879 Cca-Chr3 50114716 50120799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02879 16 294 Homeobox Transcription Factor Family AT1G23380 49.141 2.56e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca03g02879 KNOX2 8.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02879 - - gmx:100814830 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02879 03 50114716 50120799 Cca02g01416 02 32697076 32703029 PCT