Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02873 ATGGATCGGGGAGGAGGATCCAACGGCGGATCTTGCTACTATGCCGTCCTCGGGATTCGCAGGGACGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAGACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTTCCAATCCCGCAACTGCCGGAGAAGCCAAGCGCCGCTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTTTCGGATCAGTCCAAAAGGTCAATGTACGATGCGGGGCTATACGACCCTTTGGAGGAAGAGGATCAAGAGTTTTGTGATTTTATGCAAGAGATGATTTCAATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAAAGGATGTTCGTGGAGATGGTGGGGGGAGATGGAATTGGCTTTGACTTGAATCAGGATCACACGGCTGGGAAACGAGGACGCGTAAATGGATCCAAGGGCAACGCGCCCAAGCGCAGTAACTCTCGTTCATAG 483 0.5259 MDRGGGSNGGSCYYAVLGIRRDASFSDIRTAYRRLAMRWHPDKWASNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQEFCDFMQEMISMMNNVKDEGDSLEDLQRMFVEMVGGDGIGFDLNQDHTAGKRGRVNGSKGNAPKRSNSRS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02873 160 SUPERFAMILY Chaperone J-domain 12 84 IPR036869 -
Cca03g02873 160 MobiDBLite consensus disorder prediction 132 160 - -
Cca03g02873 160 Pfam DnaJ domain 13 78 IPR001623 -
Cca03g02873 160 SMART dnaj_3 11 73 IPR001623 -
Cca03g02873 160 PRINTS DnaJ domain signature 14 32 IPR001623 -
Cca03g02873 160 PRINTS DnaJ domain signature 32 47 IPR001623 -
Cca03g02873 160 PRINTS DnaJ domain signature 53 73 IPR001623 -
Cca03g02873 160 PANTHER PUTATIVE, EXPRESSED-RELATED 9 146 - -
Cca03g02873 160 PANTHER PUTATIVE, EXPRESSED-RELATED 9 146 - -
Cca03g02873 160 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Cca03g02873 160 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Cca03g02873 160 CDD DnaJ 12 70 IPR001623 -
Cca03g02873 160 Gene3D DnaJ domain 4 104 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02873 Cca-Chr3 50008907 50009840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02873 12 79 C2H2 Transcription Factor Family AT1G74250 44.928 4.03e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02873 - - gmx:548049 306.605