Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02855 ATGGTGTCGCTGAAACTGCAGAAGCGGCTGGCCGCAAGCGTGCTCAAGTGCGGAAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGGCAAAACATCAGGAAGTTGGTTAAGGATGGGTTTATCATCAGGAAGCCAACCAAGATTCACTCCCGGTCACGTGCTCGCAGGATGAAGGAGGCAAAGAGGAAGGGTCGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTTCCCACCAAGATACTTTGGATGAGAAGGATGCGTGTGCTCAGACGGTTGCTTCGTAAGTACCGGGAATCAAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAAGGTAATGTTTTCAAGAACAAGAGAGTCTTGATGGAGAGCATTCACAAGTCCAAGGCTGAGAAGGCTAGAGAGAAGACTTTGTCTGATCAGTTTGAGGCGAAGCGTGCAAAGAACAAGGCTAGCAGGGAAAGGAAAATTGCTCGGAGGGAGGAGCGCTTAGCACAGGGTCCTGTTGATAAGCCAGTACCCAGTGCCCCAGCAGCCACAGCACCACAGTCTGGCCAAGCGCCAAAGAAATCCAAGAAGTGA 633 0.4976 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPVDKPVPSAPAATAPQSGQAPKKSKK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02855 210 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Cca03g02855 210 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Cca03g02855 210 Gene3D - 57 186 - -
Cca03g02855 210 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Cca03g02855 210 PANTHER RIBOSOMAL PROTEIN L19 1 210 - -
Cca03g02855 210 PANTHER 60S RIBOSOMAL PROTEIN L19 1 210 IPR039547 GO:0003723|GO:0003735|GO:0022625
Cca03g02855 210 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Cca03g02855 210 MobiDBLite consensus disorder prediction 57 79 - -
Cca03g02855 210 MobiDBLite consensus disorder prediction 144 210 - -
Cca03g02855 210 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Cca03g02855 210 MobiDBLite consensus disorder prediction 196 210 - -
Cca03g02855 210 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Cca03g02855 210 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Cca03g02855 210 MobiDBLite consensus disorder prediction 144 184 - -
Cca03g02855 210 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02855 Cca-Chr3 49883119 49885294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02855 1 210 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.286 1.49e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02855 K02885 - gmx:100527275 389.037