Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02854 ATGGTGGAAAGAAGAAGAAAGCCTCTGATACTGTGTTCTACAAAACACATAATCAATTCCACTGCCCCAATCTTCCACCATCAATCTTCTCCTAGCTTCCGCATACCCGTAGGAATTCTCCGATTCCCAAACCCAAACACAAACCCCTCTCTCGACCACTCCGCACTCATCGCCCTCTCCACTCGCCTCCTCAAAACCCTCTCCATCGCTTCAGGTTCACCGGTTCTGATCAAGAATGTCGACACCAACACACAAAAAGTCGCAGTGGCCGTTGCTCTTGATCCACCATGCACCACCAGTACCACTAACATAGACTTAGACGCACCCtcttcttcttcttcttcttcttctCCAATAATGCTTGTTTTTCCATCTTGTGATTTCCCTCTTGGTGGTGGCTCTTTGTTAGATGATCAAGTTGCTTATGTATCTCCTCTTTTGGCCTTTAACCTTAACCTGCACGTGGCGTGCTTAAAATCCATTCTTTTCCACGGTCAAGATGCTTTGGCTTCGTATTTCAAACCTCAGGGTAAAAGGGGTGACGAGGATGCTACTAAAAGCAATGTGGATTCTGTCATCAACGTTGAATTGGAACCGCTTGCTCGGCCTCCAAGGTTTGTCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCAAAATGTGGCATCCTTAAATCCGTTAGAGCAAGTTCACCTGTTGAGTCCCAAGAGCGGCAAGACATGATTGACTTGGCATTGCAAAAGTACTTTGAGGTTGACAGGTATTTGTCAAAAGGAGATGTTTTTGGGATTAGCATAAGTTGGAACTGCAATTCCCCCATTTGCGTCCCTTGCAATCAAGAACTGCTAAATAAAAATGACAACCTTATTTGTTTCAAGGTTGTAGGTATGGAACCATCAGATGAACCGGTTTTCCGTGTCAACAACACCTTAACTGCTCTCGTGCTAGTAGGGAGCTCTCCATCCGCACTCCCTCCAGATTTGTTAATTGGTGGACCTGAAGGACCTGTGCCTTTGCAAGGGGACACTGTGAAGATCTTGGCTTCGATACTAACACCAACTCTTTGTCCATCTGTACTTTCTTCCAAGTTTAGAGTTTCAGTTCTGTTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGTCGACTGGGGCTGCATGTGGTGGAGTATAACTGTCATGATCTAATGGTGTCTGATAGAACATCTGTTGCTTTAGCGCAAGTTTTCAAAACAGCTCAAAGATATGCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCAAGATTCACAATCACCTGAGGTTTCAGCACATGATCAAAGAGGAAATGCATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAGTGAACTTGATGATAGTAACTCCCCGGGGAAACCAAATGGTGAATTTGTGGAGAAAAATGCTGAAAACACAAGTGGGCATCAGGTCCTGTTGATTGCTACTGCTGACAGTTCAGAAGGTCTGCCTTCAACTATCAGACGATGTTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAACAAAGGGCTGAAATGCTATTTCAGTCACTGCAAAGTGTTTCTGAACTCCTAACTAGTACTGATTTGGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGATATTTGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCTAGAAACAATGCTAAAGTTGACAAAGATGTGCCTGATGATGCAGATAGTTCTTTTAGTTCCAAGATGGCAGAGGACAATTATGGTAAAGTTTCACCTCAGATTCCTGGGAAAGAAGACTTGTTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAGTCAATCCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCAGGATTACGGAAGCGATCTGGTGTTCTTTTGTATGGTCCTCCTGGAACTGGAAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGTTCATTGAATTTTCTTAGCGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAGAAGAATGTACGAGACATTTTCCAGAAGGCCAGATCAGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTAGGGGTGCTTCTGGAGATTCTGGGGGCGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGACGGCTTAAGTGATTCAACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTTTGCGCCCTGGTCGATTTGATAAACTGCTATATGTTGGAGTTAACTCTGATGCATCTTACAGGGAGAGGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTTACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGCAAAGTTTCAAGTGCAAACCCAGAGTCTTCCAGCCAAGATAATGAAGCAGATTCAGTTCTTGTTGAATACAATGATTTTGTCCAGGTCTTAGAAGAGCTGTCGCCTTCCCTCTCCATTGCTGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTAAATGA 2784 0.43 MVERRRKPLILCSTKHIINSTAPIFHHQSSPSFRIPVGILRFPNPNTNPSLDHSALIALSTRLLKTLSIASGSPVLIKNVDTNTQKVAVAVALDPPCTTSTTNIDLDAPSSSSSSSSPIMLVFPSCDFPLGGGSLLDDQVAYVSPLLAFNLNLHVACLKSILFHGQDALASYFKPQGKRGDEDATKSNVDSVINVELEPLARPPRFVSLLRVSFVKIPKCGILKSVRASSPVESQERQDMIDLALQKYFEVDRYLSKGDVFGISISWNCNSPICVPCNQELLNKNDNLICFKVVGMEPSDEPVFRVNNTLTALVLVGSSPSALPPDLLIGGPEGPVPLQGDTVKILASILTPTLCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMVSDRTSVALAQVFKTAQRYAPAILLLRHFDVFQDSQSPEVSAHDQRGNASEVASVIRKFTEPVSELDDSNSPGKPNGEFVEKNAENTSGHQVLLIATADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLFQSLQSVSELLTSTDLEALVKEIVGQTSGYMPRDICALIADAGANLFPRNNAKVDKDVPDDADSSFSSKMAEDNYGKVSPQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVSSANPESSSQDNEADSVLVEYNDFVQVLEELSPSLSIAELKKYEQLRDQFEGTSK 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02854 927 Gene3D - 339 542 IPR027417 -
Cca03g02854 927 ProSitePatterns AAA-protein family signature. 784 802 IPR003960 GO:0005524|GO:0016887
Cca03g02854 927 MobiDBLite consensus disorder prediction 464 484 - -
Cca03g02854 927 Gene3D - 815 901 - -
Cca03g02854 927 Gene3D - 639 916 IPR027417 -
Cca03g02854 927 SMART AAA_5 363 523 IPR003593 -
Cca03g02854 927 SMART AAA_5 677 817 IPR003593 -
Cca03g02854 927 MobiDBLite consensus disorder prediction 586 610 - -
Cca03g02854 927 PANTHER AAA-FAMILY ATPASE 24 923 - -
Cca03g02854 927 CDD AAA 357 427 - -
Cca03g02854 927 Pfam ATPase family associated with various cellular activities (AAA) 681 813 IPR003959 GO:0005524|GO:0016887
Cca03g02854 927 Pfam ATPase family associated with various cellular activities (AAA) 367 518 IPR003959 GO:0005524|GO:0016887
Cca03g02854 927 PANTHER PEROXISOME ASSEMBLY FACTOR 2 24 923 - -
Cca03g02854 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 591 IPR027417 -
Cca03g02854 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 921 IPR027417 -
Cca03g02854 927 CDD AAA 675 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02854 Cca-Chr3 49876305 49882901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02854 647 884 Calmodulin-binding Proteins AT3G56690 39.331 4.07e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02854 K13339 - gmx:100820183 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02854 03 49876305 49882901 Cca03g02854 03 49876305 49882901 ECH
Cca02g00896 02 24520517 24521272 Cca03g02854 03 49876305 49882901 PCT