Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02852 ATGGATGTGTGGAACGAAGATTTCTCGGAGCTGGAGATTGGGAGCTCCGCCGAATCTTTCCAGAAGTTTTTGGTTTCGCAAAGAGAGCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAATCTCACCGGCGTCAATCCTCTCTCTCAAGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGGAAAAGACCTAGGGATTTGTTGAATCCGAAGGCTGTAAATTACATGCAATCAATTTTTTCGATTAAAGATGCTGTTAGCAAGAAAGAATTGCGCGAGATCAGTGCTTTATTTGGTGTCACGGTGACACAGGTGCGTGACTTTTTCACTAGTCAACGTTCAAGAGTGAGGAGAATAGTGCAGTTGTCAAAGGAGAGGGCATTAAGTTCTAATTCTTGTGAAGAACCTCATGATGATCAAATAAATTCTGATCCTGCGAGACCAATAGATCCAGCTCCTTTAAACTCTGTTGGCCTGTCCAATGCTGAAGAATCTTGTTCAGCACAGGAAGCAGCTTTGTCTGACCTAGATGACTCAGATAAACAATTTGTTGATAACATTTTTAGCTTAATGCAGAAAGAGGAGACATTTTCTGGGCAGGAGAAGTTGATGGAGTGGATATTGACAATACAGAATTTTTCAGTATTGTTGTGGTTTTTGACCAAAGGGGGTGGAATGACTTTAGCAACTTGGTTGAGTAACGCAGCTGTTGAAGAGCAAACAACTGTCCTTCTTCTTATCTTGAAAGTTCTTTGTCATTTGCCTTTACATAAAGCTGTTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTACGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTATTGTCAAAATGGAGCAAATTATTGGCAAGGAACCAAGCAATAAAGAGGCCCAATGGTGTTAAGTCTTCTAGTGATGGTCATAAAGAGTTAATGCTTTCTCAGAGCATTGGTCAATTTATGGGCTCTGAATCATGGCATTCAAATATTGATGTTCCTGAAGACATTCTCGCTCTCTCAAATGAATGTTCAGATAATTTCAGGAAAGTTGGATCTCCACAAGTTATGAAATTGTTGCCTTCCAGCTTGGATGATTCTAACAGAAAGTCCACTCTTGGTGTATCTTCATCTCAATCAAGGGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAGTCAGCCAGCAGAAGCTCACAAGTGATGAGAGCAGGGCCTGTAAGTCAAGGGCGTCCTATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCATTATTTATGCAGAGTAAGTATGGGAAAACTGGTTCTTCAAAAGATAGTAAAGAAACAAAGATTGATAGTCTGAATAAACCTCAGACAAACCCGGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCACCCAAAATTGAAGAAAACAAGAAACCTCTATTACTTGCCTCTAAAACCACTAATAGGCTGGAAGCTTCATATTCAAAACCGAAAATGGATGTGAAGGAACCTCTCTGGGAGAAGTGCAAAAGGGTTCAGATCCCATGGAAAATACCAGCAGAAGTAAAACTTAAAGATACCTGGAGAGTTGGTCGCGGTGAAAATAGCAAAGAGGTTGATGTTCAGAAAAACAGAATCCGCAGGGAAAGGGAAACTATATACAAGACCGTCCAAGAGATGCCACCTAACCCCAAAGAGCCTTGGGACCTTGAAATGGACTATGATGACACTTTGACACCGGAAATTCCTACTGAACAGCTGCCAGATGGTGATGGTGCTGAAATAGCCGTTTCCCCCAATCAGGATGCAACTCATGCTGTTCAAGGGGTGGCCTCCACATCTTCAACCAGTTTGGCTACTGCTGAGCCTGATTTAGAATTGCTTGCCGTACTGCTAAAAAATCCAGGGTTGGTATTTGCCTTAACTTCTGGACAAGCTGGTAGCATACCTAGTGAAGAAACCGTGAAGCTGCTTGATATGATTAAGAGAGGAGGTGTGAGTTTGGGTTTAAGTGAAAGTACAAATGGCAATTATGGCACGAGTGTAGAAGCCCCGGAGAAGGTGGAAGTTTCTCTCCCATCTCCAACTCCCTCGAGCGATCCAAGAACGAGTGGATGGAGCACAGAAGCATCAAAAAATCCCTTTTCTCGGCGAAGTGTAGCACCTGATAGAATTATCCAGAACCATGCTTCAGTGGCATCTACCAACTTAGTATCTCAGATTCCCGTAACTGCCACTACAGTAAGGCAACAGGCAACAATTTTGGTTCCATCTTCGAGGCAGCTTTCAAGCACATCAGTTTCTCCATATTCACTGCCTCAGGCAACTAATGTTATTCCTGAAAAGCCACCACCTCTCATGCATGTACAAACACCGTCCTCAGATCTAGGTTTAACCATGAAGAACAACTTAATCACTGCAAATGCATCTTCTGTTAAATTATCTGGCACACATTCAACTCTAGCAATGCGGGGTGAAGGCACCAATTATGTAAAACCTGTACCTAATTTGAGTGTACAACACGAGGGTTTGTCTAACTCATTCCCACAAACCTTCAGGTTACCCTCACCAACGCCATCACATTCAGCCTCACACCAACAAAGACATCATCAACATTCAGCCCCACAGCAACAAAGACATCATCAACAGGAAGCTCATTACACTGAACCTTCCTATCGTACCCCTGTGCATTCCTACCCGCCACAAACCGAAAAATCAGATCATGGGTCTGATACGTGGAGAGTTAGGCAGCAGGAAGTGTCATCTAGTTATCATTCTCAACGAAATCATAATAACTATAACACAATGGTTGGGGGCTCCAGACAATCTGGTATTTGGGATAGAAATAATCATGGAAGGGGAGAATTTGAATCATGGAGCCCGGAGAATAGTCCAACTAGAAATCCTAGGTATGCACCGGGTAGAAACTACCCCGAGTCCAGAATGAATCATGGAAGAAATCATAGACCTGAATGGTCAAGGCAGAGGGGTTCTTCTGGACATTGGGACCCTGGTAGGCAGGGGAATAGAAAGTGGCATGATCAGAGACGATGA 3099 0.4318 MDVWNEDFSELEIGSSAESFQKFLVSQRELFHSQIDQFQEIVVTQCNLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSIFSIKDAVSKKELREISALFGVTVTQVRDFFTSQRSRVRRIVQLSKERALSSNSCEEPHDDQINSDPARPIDPAPLNSVGLSNAEESCSAQEAALSDLDDSDKQFVDNIFSLMQKEETFSGQEKLMEWILTIQNFSVLLWFLTKGGGMTLATWLSNAAVEEQTTVLLLILKVLCHLPLHKAVPMHISAILQSVNKLRFYRTSDISNRARVLLSKWSKLLARNQAIKRPNGVKSSSDGHKELMLSQSIGQFMGSESWHSNIDVPEDILALSNECSDNFRKVGSPQVMKLLPSSLDDSNRKSTLGVSSSQSRERRKVQLVEQPGQKSASRSSQVMRAGPVSQGRPMSADDIQKAKMRALFMQSKYGKTGSSKDSKETKIDSLNKPQTNPASIAACSSKVPTPPKIEENKKPLLLASKTTNRLEASYSKPKMDVKEPLWEKCKRVQIPWKIPAEVKLKDTWRVGRGENSKEVDVQKNRIRRERETIYKTVQEMPPNPKEPWDLEMDYDDTLTPEIPTEQLPDGDGAEIAVSPNQDATHAVQGVASTSSTSLATAEPDLELLAVLLKNPGLVFALTSGQAGSIPSEETVKLLDMIKRGGVSLGLSESTNGNYGTSVEAPEKVEVSLPSPTPSSDPRTSGWSTEASKNPFSRRSVAPDRIIQNHASVASTNLVSQIPVTATTVRQQATILVPSSRQLSSTSVSPYSLPQATNVIPEKPPPLMHVQTPSSDLGLTMKNNLITANASSVKLSGTHSTLAMRGEGTNYVKPVPNLSVQHEGLSNSFPQTFRLPSPTPSHSASHQQRHHQHSAPQQQRHHQQEAHYTEPSYRTPVHSYPPQTEKSDHGSDTWRVRQQEVSSSYHSQRNHNNYNTMVGGSRQSGIWDRNNHGRGEFESWSPENSPTRNPRYAPGRNYPESRMNHGRNHRPEWSRQRGSSGHWDPGRQGNRKWHDQRR 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02852 1032 MobiDBLite consensus disorder prediction 137 151 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 856 1032 - -
Cca03g02852 1032 SUPERFAMILY Homeodomain-like 69 131 IPR009057 -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 373 431 - -
Cca03g02852 1032 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Cca03g02852 1032 MobiDBLite consensus disorder prediction 405 421 - -
Cca03g02852 1032 SMART HOX_1 68 130 IPR001356 GO:0003677
Cca03g02852 1032 MobiDBLite consensus disorder prediction 996 1011 - -
Cca03g02852 1032 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 1032 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 707 730 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 971 985 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 445 488 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 374 396 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 136 161 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 464 478 - -
Cca03g02852 1032 CDD homeodomain 69 125 IPR001356 GO:0003677
Cca03g02852 1032 MobiDBLite consensus disorder prediction 930 962 - -
Cca03g02852 1032 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 226 313 IPR035441 -
Cca03g02852 1032 Gene3D - 66 127 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 856 879 - -
Cca03g02852 1032 MobiDBLite consensus disorder prediction 686 734 - -
Cca03g02852 1032 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 1032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02852 Cca-Chr3 49833789 49842738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02852 520 734 Homeobox Transcription Factor Family AT4G02560 50.691 1.80e-49 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02852 - - gmx:100780237 1736.47