Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02851 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTTTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAACCAGCAGCAACAGCTACAAAACCAACTTCATGACTCAAGTTCAGGACCATCCAGTGCTTGCAATAGCAATAGCAATGCCTCCACTAATCAACAACAAACCAAGAAGAAAAGAAACCTTCCTGGAACCCCAGATCCTAATGCTGAAGTTGTTGCGTTATCACCAACCACGCTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGATTTCAGAGGGACCAAAACCTTCAGCTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAACAAGCACTGAAGTGAAGAAACGGGTTTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACCGGAATCAAAAAGCATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACACACAGAGCTTTCTGTGATGCATTAACTGAGGAAAACAACCGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAGCCTGCAAAGTCAAATACCTGATCTTATGTCTACCATGCCTCTGAGCACTAGTCCCAACACATCATCAAAGTTCGGGGACTATGACCCTAAGAACCCACTAAAATCACTCCCCCAAGAACTAGTCCCAATACCATTCAAGTCCATGAGCATGGGTGGTGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAATCCATGTCTCCCTCTTCTTCAAGCCTTCAACTAGGCTCCAACACCTCATCAAGCTTCAACTACTTGCAAGACAACAAAAACGGAGGCCTCATTGCTGGCTCAGCACAGATGTCAGCAACAGCTTTACTACAAAAAGCAGCACAAATGGGAGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTGCTCCTGATCATGTTTCTTCCACTAGGCCACCACCATATTCTGGTGCTATGCTGCACCATAACACCTCATATGACCACTTCTCTCCACAGCCTGATCTGTCCACCATGGCTGGGGTGAGTAGTGGAGGAGCATTCATCAATCATTTGTTTCAAAAAGGACAAGAGATTTCGCAAGTTTTTGACACCAACACTACCGGGTCTTCAATCAATGATGCAGGAATGTTCAGCCAAATGCCAATGGGAAGTGATCACACCCCAGGATTGATGAAGAACGTGGAACAAGAGGTTAGTAATAGTACGAGTTTGATCCATGGAAGAGATGTGGCAGAAGGTAGCACAATGCAGCCATCGAGGTTTGGAGGGAGTGACATGACAACGGTTCATGATTTCCTTGGCATTGGTGGTTCAACTTCAAGAGCAGCAAGTTTGCATGAACCACAGCAACATTTGGAAGCATTAAGCCACCAGAGATCAGAAGTTATGAATCATTTTCATCACCATTTTCCACACGATGATTCAGCTATGGAGGAACCCATGTGGGATGTTTGA 1650 0.4527 MSNISGDEGSFSSGNNGEEVHQENQQQQLQNQLHDSSSGPSSACNSNSNASTNQQQTKKKRNLPGTPDPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPSLQSQIPDLMSTMPLSTSPNTSSKFGDYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYLQDNKNGGLIAGSAQMSATALLQKAAQMGATASNSINSPMMQKGFVSAPDHVSSTRPPPYSGAMLHHNTSYDHFSPQPDLSTMAGVSSGGAFINHLFQKGQEISQVFDTNTTGSSINDAGMFSQMPMGSDHTPGLMKNVEQEVSNSTSLIHGRDVAEGSTMQPSRFGGSDMTTVHDFLGIGGSTSRAASLHEPQQHLEALSHQRSEVMNHFHHHFPHDDSAMEEPMWDV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02851 549 MobiDBLite consensus disorder prediction 1 72 - -
Cca03g02851 549 Gene3D Classic Zinc Finger 141 221 - -
Cca03g02851 549 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 533 - -
Cca03g02851 549 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Cca03g02851 549 MobiDBLite consensus disorder prediction 1 63 - -
Cca03g02851 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Cca03g02851 549 MobiDBLite consensus disorder prediction 246 265 - -
Cca03g02851 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 533 - -
Cca03g02851 549 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Cca03g02851 549 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Cca03g02851 549 SMART c2h2final6 128 158 IPR013087 -
Cca03g02851 549 SMART c2h2final6 163 183 IPR013087 -
Cca03g02851 549 SMART c2h2final6 87 109 IPR013087 -
Cca03g02851 549 Gene3D Classic Zinc Finger 65 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02851 Cca-Chr3 49820944 49824106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02851 58 353 IDZ Gene Family AT3G50700 55.836 4.31e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02851 zf-C2H2 0.0056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02851 - - gmx:100782774 900.582