Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02849 ATGGTGAAGACGAAGATGAAGGGGAAAAGCAATGGCATTGGAAAGAAGCAGAGTAGGAAAATGAAAGGCACGTTGAGCAACACCACCACGCGTCACTTGCAGCTTAAGCTAGGTCAAGTGTCCCTCTTTCCCCTTCAATCTTCTGCTTCTTCAGCCTTCCAGAACCTTCTCGATGCCCAACCTCCGCATCAGTCTTCCTCGCACGCCGACGACACTACCGACAGAGACTTCATTCTCAGCCAGGACTTCTTTTGCACTCCGGATTACATAACCCCTGATAATCAGCGTAATTTGAACGCCTTTGACTGCAATATGGAAAATACTCCTTGCCCCAAATCGCCTGAGAAGCTGAATACTACAAAAAGCAAGAGATGTCGACTGGATGCAATCTCAGTACACCCTCTCAGCCCTACCTTTTCTAGTGACCATCAACCAGTTGTGGAACTTGGAAAGGACTCTGGTACCGAAGAAGTGGCTGTTGAGAAAATAATTCCAGCTGCTAAGCCGAAGGGTCAAAATTATGTGTCACATTCTGCAGTTACATTACGTTGCAGGGCTATGCCTCCTCCTTGCTTTAGGAACCCCTATTTGAAAGACGTTTCAAAAACGGAGATAGATCCTTTTGAAAACCAAAGATTAAAATGTGCAGGTCTCTTCCCTGCAGTTACTGGTGGTGATGGGCTTTCACGCTATCGTACTGACTTTCATGAAATTCAGCAAATTGGTAGAGGGAATTTTAGTAGTGTTTTTAAAGTATTAAAACGAATAGATGGCTGCTTGTATGCTGTGAAACACAGCACTAGACAGTTACGGCTGGAAACAGAAAGGACAAAAGCTTTGATGGAAGTTCAAGCTTTGGCAGCCCTAGGTTTGCATGAGAACATTGTGGGCTACTATACTTCTTGGTTTGAAAATGAACAGCTGTACATTCAGATGGAGCTATGTGATCACAGCTTATCCATAAGAAAATGTTCACAGTTATTTACAGAAGGACAGGTGTTAGATGCCTTATTTCAGGTTGCCAAAGCACTGCGATTTATACACGAGAAGGGAATAGCTCATCTAGATGTCAAACCTGACAATATTTATGTCAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTTATTGACAGTAGCCTGCCAGTTGAGGAGGGCGATGCTCGTTATATGCCCCAGGAAATCCTTAATGAGAATTATGATCACCTTGACAAGGTTGATATCTACTCCTTAGGAGCTTCTATTTATGAACTAATTCGTGGGTCGCTTTTGCCAGAATCAGGAGATCAATTTTTAAATCTTAAAGAGGGCAAGTTAACACTTCTGCCTGGTCATTCGTTGCAACTTCAAAACTTGCTCAAGGTCATGATGGATCCTGATCCGGTTAAGCGGCCTTCTGCCAAAGAATTGGTAGAGAACCCAATTTTTTGTAGACTCCAAAGAACAGCTTGA 1461 0.4305 MVKTKMKGKSNGIGKKQSRKMKGTLSNTTTRHLQLKLGQVSLFPLQSSASSAFQNLLDAQPPHQSSSHADDTTDRDFILSQDFFCTPDYITPDNQRNLNAFDCNMENTPCPKSPEKLNTTKSKRCRLDAISVHPLSPTFSSDHQPVVELGKDSGTEEVAVEKIIPAAKPKGQNYVSHSAVTLRCRAMPPPCFRNPYLKDVSKTEIDPFENQRLKCAGLFPAVTGGDGLSRYRTDFHEIQQIGRGNFSSVFKVLKRIDGCLYAVKHSTRQLRLETERTKALMEVQALAALGLHENIVGYYTSWFENEQLYIQMELCDHSLSIRKCSQLFTEGQVLDALFQVAKALRFIHEKGIAHLDVKPDNIYVKNGVYKLGDFGCATLIDSSLPVEEGDARYMPQEILNENYDHLDKVDIYSLGASIYELIRGSLLPESGDQFLNLKEGKLTLLPGHSLQLQNLLKVMMDPDPVKRPSAKELVENPIFCRLQRTA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02849 486 SMART serkin_6 235 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02849 486 SUPERFAMILY Protein kinase-like (PK-like) 228 482 IPR011009 -
Cca03g02849 486 PANTHER BNAA08G27310D PROTEIN 406 483 - -
Cca03g02849 486 PANTHER BNAA08G27310D PROTEIN 28 393 - -
Cca03g02849 486 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02849 486 Gene3D Phosphorylase Kinase; domain 1 226 313 - -
Cca03g02849 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Cca03g02849 486 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 28 393 - -
Cca03g02849 486 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 406 483 - -
Cca03g02849 486 Pfam Protein kinase domain 235 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02849 486 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g02849 486 ProSitePatterns Protein kinases ATP-binding region signature. 241 264 IPR017441 GO:0005524
Cca03g02849 486 Gene3D Transferase(Phosphotransferase) domain 1 314 482 - -
Cca03g02849 486 ProSiteProfiles Protein kinase domain profile. 235 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02849 Cca-Chr3 49801844 49805796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02849 1 483 Core Cell Cycle Gene Families AT1G02970 60.606 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Cca03g02849 Pkinase 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02849 K06632 - gmx:547742 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02849 03 49801844 49805796 Cca03g02849 03 49801844 49805796 ECH