Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02832 ATGTCCTTCGCATCCTTCTCGTGTGCATTCCCTGAGAAACAAACCTCAGGGGACAAGTTTCTCTCAACTCTGCTTCAATGGCTTGGATTTATTTTCCTCTCACCTTGTCCTCAGAGAGCGATGTTGACCTTCGTTGATGTCGTACTTCTCTTGTTTCTCTCTGTGTTCTCTGCTACCAAGCTTTGGAAAAGGTTCACCTCCGACGGAGGGTCCCACATCGATCTCAACAAACCGCTCATCAGAAACAACAGATCCATTTTCTCTACAACTATCCAGTTTAAGCTAACCTTATCTGTAACAGTTGTTTTGACTATACTATACACTGTTGCTTGCGTTTTTGCATTCAGAAGCTCCTCCAAGGGGCCATGGAAGCAAGTTGATGAGGTGTGTTGGTTGGTCCAGGCCATAACACATGCGGTGCTTGCAGTGTTAATCATCCACGAGAAAAGATTTGAAGCCGTTACACACCCTCTATCGGTTCGAGTTTATTGGATTGTCAATTTCTTTGTCATTTTATTCTTTACCGTTTCGGCGGTTATTCGTTTGGTCTCAGTCGACGTGGATGAAACCAAAGGCTTCAAGGTGGACGATGTGGTCTCTTTTGTTTCGCTTCCTCTGTCGTTGTTTCTGTTTTTTATGGCGGTTAAGGGATCCACAGGCGTTGTTTTGTGGACAGAAGAAACAGAACCACTTGTTGACGAGGGAAAATCTGAGGTTACTGGCTTTGCTTCAGCTTCTCTATTTTCCAAGGCATTTTGGATTTGGATAAACCCCTTGTTGCGTAAAGGGTACAAATCTGCATTAAAGATTGATGAGATTCCAACGCTTTCTCCCGAGCATAGAACTGAGAGGATGTCATCCATTTTTGAATCAAAATGGCCTAAGCCAAACGAGAGGTCGAAGCATCCGGTTAGAATCACCTTGCTTCGATGCTTTTGGAAGGAGTTAGCCTTCATTGCATTCCTTGGATTTATAAGGCTGAGTGTCATGTTTGTGGGGCCGCTTCTCATACAAAGCTTCGTTGATTTCACTTCAGGGAAGAGAAGCTCTCCATATGAAGGATACTACCTCGTCTTGATTCTTCTCGTTGCTAAGTTCGTTGAAATCTTGAGTACTCATCATTTCAACTTCAACGCTCAGAAGCTTGGGACGCTTATACGCTGCACTCTCGTCCCTTCTTTGTATAGAAAGGGATTAATGCTGTCGTTCACTGCTCGGCAAGATCACGGAGTTGGAACCATTGTGAATTACATGGCTGTTGATACTCAGCAACTCTCTGACATGATGCTTCAGTTACATTCTGTGTGGATGATGCCACTTCAAGTTAGTATTGGCTTACTTCTGCTTTACAATTCTCTAGGTGCCTCGGTGGTCACTGCTTTTCTTGGTCTTCTTGGTGTTTTTGTGTTTGCTGTGATTGGCACTCGTATGAACAACACCTTCCAGTATAATGTGATGAAGAACCGTGACTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGCGTGATCAAGTTTCAGGCCTGGGAGGAACATTTCAACCAGAGGATTATGGGTTTCCGCGAGAAGGAGTATGGGTGGCTCTCCAAGTTGATGTTCTCAATTTGCGGCAATATTGTGGTGATGTGGAGCACGCCGTTGTTGGTATCAACTCTCACGTTTGGTACGGCTGTTTTGCTGGGAGTTAAACTTGATGCAGCCACGGTCTTCACCACTACATCTGTGTTCAAGATCTTGCAGGAGCCTATTAGGACCTTCCCACAGTCTATGATATCTCTTTCACAGGCAATGATATCACTGGAGAGGTTAGATAGGTTCATGTTGAGCAGGGAATTGTCGAATGATTCAGTTGAGAGAGAGGAAGGGTGTGGTGCACAAACAGCTGTGGAAATTATTGATGGGACTTTTAGTTGGGATGATGATAACACACAGCAGGACTTGAAAAATATTAATTTGGAGATCAAAAAGGGGGAGCTTACAGCAATTGTTGGGACTGTAGGGTCAGGAAAGTCCTCTCTTCTTGCGTCAATTCTTGGAGAGATGCGCAAGATCTCTGGAAAGGTACGGGTTTGTGGGAGTGTTGCCTATGTTGCACAAACATCTTGGATTCAGAATGGGACTATTGAAGAAAATATTCTCTTTGGTTTACCAATGGACAGACAGAGGTACAATGAAGCTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGAGGTCAGAAGCAGCGTATACAACTTGCCAGGGCGGTATATCAGGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAGGGCAAGACCACTGTTCTTGTAACACACCAAGTTGATTTCCTACATAATGTGGATCTTATATTAGTGACGAGGGACGGTATGATAGTCGAATCAGGGAAATACAATGATATATTAGATTCTGGAATGGATTTTAAAGCCCTAGTAACTGCACATGAGACCTCCATGGAACTAGTAGAGCAGGGTGTGGTCATACCTGGTGAAAATTTGAGCAAACCAATGAAAGCTCCAGAGGCAGCTTCTAATTATGAGGGAACCGATGGTGAAAGCAATTCTGTTGACCCGCTTGAGTCTAGTAAGAAAAGTTCTAAACTTATCAAAGAAGAGGAGAGAGAAACCGGCAAAGTGAGCTTACATGTGTATAAACTATACTGCACTGAGGCTTTTGGGTGGTGGGGTATTACAATTGTATTGGTTCTTTCTTTGTTATGGCAAGCGTCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAGAACGTGCTGAAGTGTTTAACCCTTCTCTGTTCTTGTCCATCTATGCAATTATTACTGCCATTTCGGTTATTTTGGTAGTGATAAGATCCTACTTCTTTACACTCTTGGGGCTAAAGACTGCACAACTTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCACCCATGTCTTTCTTTGACACTACGCCATCTGGGAGAATTCTAAGTAGGGCATCCACTGATCAGACCAATGTTGATGTCCTCCTCCCCTTGTTCACGGGAATTGTTATTGCCATGTACATTACAGTGCTCAGCACCTTAATCATCACCTGTCAAAATGCTTGGCCAACAGTGCTTTTGATAATTCCTCTTGTTTGGTTGAATATATGGTACCGGGGTTACTATCTTGCATCATCTCGTGAGTTAACTCGGTTGGATTCAATTACCAAAGCACCAGTTATTCATCACTTCTCTGAAAGCATTGCGGGAGTCATGACAATCCGCGCATTCAGAAAGCAAAAGAAATTTTGCGAAGAAAATCTCAAACGGGTGAATGCTAATTTGCGTATGGATTTCCACAACTATAGTTGTAATGTGTGGTTGGGAGTACGCTTAGAATTGCTTGGAAGCTTTGTCTTTTGCGTTTCTGCCTTGTTCATGATCATCTTACCCAGCAGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAATAGTGTCTTGTTCTTTGCTGTATACTTGAGCTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTCACAAATATTCCATCGGAACCAGAATGGAAAATCAAGGATCATCTGCCTCCTTCAATTTGGCCTGGTCAAGGCAATGTAGATATCAAAGACTTGAAGGTCAGATATCGTCCAAACACTCCTCTGGTTCTTAAAGGCATTAGTTTAAGCATTAGTGGAGGTGAAAAGGTTGGTGTTGTTGGTCGAACTGGGAGCGGAAAGTCAACTTTGATTCAAGTATTCTTTAGGCTGGTGGAACCTTCAGGAGGGAAAATAGTAATTGATAGTATTGACATATCCCTCTTGGGGCTTCATGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAGCCAGTCCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATTGGACAGTACACAGATGATCAAATATGGAAGAGCTTGGAACGCTGTCGACTAAAAGAGGTTGTTGCTGCTAAGCCTGAAAAACTTGACTCTTTAGTGGTGGATAATGGAGAGAACTGGAGTGTAGGGCAGAGACAGTTACTTTGTCTAGGGAGGGTTATGCTTAAGCGAAGCCGTCTCTTGTTCATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACGGATGGTGTGATTCAGAAGATCATTAGAGAGGACTTTGCAGCATGTACCATCATCAGCATTGCTCACAGAATACCCACAGTTATGGACTGTGACAGAGTTTTAGTTGTAGATGCAGGGCGAGCGAAAGAGTTTGATAAGCCTTCCAACTTGCTCCAGAGGCAATCTCTGTTTGGGGCATTAGTTCAAGAGTATGCCAACCGCTCCAATGGAATATAA 4491 0.4304 MSFASFSCAFPEKQTSGDKFLSTLLQWLGFIFLSPCPQRAMLTFVDVVLLLFLSVFSATKLWKRFTSDGGSHIDLNKPLIRNNRSIFSTTIQFKLTLSVTVVLTILYTVACVFAFRSSSKGPWKQVDEVCWLVQAITHAVLAVLIIHEKRFEAVTHPLSVRVYWIVNFFVILFFTVSAVIRLVSVDVDETKGFKVDDVVSFVSLPLSLFLFFMAVKGSTGVVLWTEETEPLVDEGKSEVTGFASASLFSKAFWIWINPLLRKGYKSALKIDEIPTLSPEHRTERMSSIFESKWPKPNERSKHPVRITLLRCFWKELAFIAFLGFIRLSVMFVGPLLIQSFVDFTSGKRSSPYEGYYLVLILLVAKFVEILSTHHFNFNAQKLGTLIRCTLVPSLYRKGLMLSFTARQDHGVGTIVNYMAVDTQQLSDMMLQLHSVWMMPLQVSIGLLLLYNSLGASVVTAFLGLLGVFVFAVIGTRMNNTFQYNVMKNRDSRMKAVNEMLNYMRVIKFQAWEEHFNQRIMGFREKEYGWLSKLMFSICGNIVVMWSTPLLVSTLTFGTAVLLGVKLDAATVFTTTSVFKILQEPIRTFPQSMISLSQAMISLERLDRFMLSRELSNDSVEREEGCGAQTAVEIIDGTFSWDDDNTQQDLKNINLEIKKGELTAIVGTVGSGKSSLLASILGEMRKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMDRQRYNEAIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTVLVTHQVDFLHNVDLILVTRDGMIVESGKYNDILDSGMDFKALVTAHETSMELVEQGVVIPGENLSKPMKAPEAASNYEGTDGESNSVDPLESSKKSSKLIKEEERETGKVSLHVYKLYCTEAFGWWGITIVLVLSLLWQASMMASDYWLAYETSEERAEVFNPSLFLSIYAIITAISVILVVIRSYFFTLLGLKTAQLFFTQILRSILHAPMSFFDTTPSGRILSRASTDQTNVDVLLPLFTGIVIAMYITVLSTLIITCQNAWPTVLLIIPLVWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRKQKKFCEENLKRVNANLRMDFHNYSCNVWLGVRLELLGSFVFCVSALFMIILPSSIIKPENVGLSLSYGLSLNSVLFFAVYLSCFIENKMVSVERIKQFTNIPSEPEWKIKDHLPPSIWPGQGNVDIKDLKVRYRPNTPLVLKGISLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPSGGKIVIDSIDISLLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDDQIWKSLERCRLKEVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRQSLFGALVQEYANRSNGI 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02832 1496 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 85 1494 - -
Cca03g02832 1496 SUPERFAMILY ABC transporter transmembrane region 934 1234 IPR036640 GO:0005524|GO:0016021
Cca03g02832 1496 CDD ABC_6TM_ABCC_D2 937 1229 IPR044726 GO:0140359
Cca03g02832 1496 Pfam ABC transporter transmembrane region 938 1190 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02832 1496 Pfam ABC transporter transmembrane region 317 584 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02832 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02832 1496 Pfam ABC transporter 1271 1419 IPR003439 GO:0005524
Cca03g02832 1496 Pfam ABC transporter 649 782 IPR003439 GO:0005524
Cca03g02832 1496 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 85 1494 - -
Cca03g02832 1496 Coils Coil 1125 1145 - -
Cca03g02832 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 631 854 IPR003439 GO:0005524
Cca03g02832 1496 Gene3D - 606 866 IPR027417 -
Cca03g02832 1496 CDD ABCC_MRP_domain1 631 830 - -
Cca03g02832 1496 MobiDBLite consensus disorder prediction 873 909 - -
Cca03g02832 1496 Gene3D ABC transporter type 1, transmembrane domain 306 605 IPR036640 GO:0005524|GO:0016021
Cca03g02832 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1487 IPR027417 -
Cca03g02832 1496 SUPERFAMILY ABC transporter transmembrane region 306 609 IPR036640 GO:0005524|GO:0016021
Cca03g02832 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02832 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 852 IPR027417 -
Cca03g02832 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1254 1488 IPR003439 GO:0005524
Cca03g02832 1496 Gene3D - 1238 1487 IPR027417 -
Cca03g02832 1496 Gene3D ABC transporter type 1, transmembrane domain 899 1235 IPR036640 GO:0005524|GO:0016021
Cca03g02832 1496 SMART AAA_5 658 839 IPR003593 -
Cca03g02832 1496 SMART AAA_5 1280 1464 IPR003593 -
Cca03g02832 1496 CDD ABC_6TM_ABCC_D1 318 605 IPR044746 GO:0140359
Cca03g02832 1496 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Cca03g02832 1496 MobiDBLite consensus disorder prediction 887 902 - -
Cca03g02832 1496 CDD ABCC_MRP_domain2 1252 1472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02832 Cca-Chr3 49677270 49683765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02832 587 847 Calmodulin-binding Proteins AT2G36910 30.072 1.00e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02832 - K05666 gmx:100808752 2517.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02832 03 49677270 49683765 Cca03g02832 03 49677270 49683765 ECH