Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02830 ATGTATTTCCATCTATGTATCCTTTGGCTAATGCAATATATTTATTTAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGAGGTAGTAGGGTGCTTTAATCGGCGTGCGCAGAAATTGCTGGAGCTACATCTCGCTTCTGGCTTCAGAAAGTATTTTTTCTGGATCAAAGGCAAATTGAAAGGGGACCATACTGCTCTGATTCAAGAAGGCAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCAATTAGGAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAGGTCCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCTTTCCACATCAATTTAAGGGAAACTAAGGTCAAATCAAGGAAGGCACCTGCTTTCTTCGAAGGATGTTCTCTCACATTTAAGGATGGGAAACCGTCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTAACTTGTTCAGTATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGCTATATGTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAATGGACTTAAGGCTGCAGAACCTAAAGAGAAATGTCCTCTATGTCGTGTGGGTGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAACTAAATATTCTGTTAGGCCGAAGCTGCCAGGAATACTGGGAGCAGAGGCTGCAGACAGAGAGGGTGGAGAGGGTTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGAGCATTCGTGGGCGTCTAA 852 0.4202 MYFHLCILWLMQYIYLVCDGTFFPSLLNEMSEVVGCFNRRAQKLLELHLASGFRKYFFWIKGKLKGDHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPAFFEGCSLTFKDGKPSLTCELFDSIKVDIDLTCSVCLDTVFDPVSLTCGHIFCYMCACSAASVSIVNGLKAAEPKEKCPLCRVGAVYEGAVHLEELNILLGRSCQEYWEQRLQTERVERVKQIKEHWDSQCRAFVGV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02830 283 ProSiteProfiles Zinc finger RING-type profile. 179 228 IPR001841 -
Cca03g02830 283 ProSitePatterns Zinc finger RING-type signature. 194 203 IPR017907 -
Cca03g02830 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 281 IPR013083 -
Cca03g02830 283 Pfam Zinc finger, C3HC4 type (RING finger) 179 227 IPR018957 GO:0046872
Cca03g02830 283 ProSiteProfiles SPX domain profile. 1 110 IPR004331 -
Cca03g02830 283 SMART ring_2 179 227 IPR001841 -
Cca03g02830 283 SUPERFAMILY RING/U-box 172 230 - -
Cca03g02830 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 17 283 IPR033326 -
Cca03g02830 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 17 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02830 Cca-Chr3 49648943 49652062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02830 169 228 C3H Transcription Factor Family AT4G28270 37.313 2.19e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02830 K16275 - gmx:100797432 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02830 03 49648943 49652062 Cca03g02830 03 49648943 49652062 ECH